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Job DescriptionP21507
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank21Aligned Residues308
% Identity21%Templatec4a4zA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  RPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL
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Template Sequence  ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH. . . . . . . RNMTKTIYTSPIKALSNQKFRDFKETFVN. . .
Template Known Secondary structure 


TT


TTS
S.......TT
S
GGGTT


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   329330.........340.........350.........360......... 370.........380.........390........
 
   106...110.........120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  DIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTL
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Template Sequence  . IGLITGDVQ. . . . . . . INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI
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TTSST
SGGGG

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TT
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TT
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   401........ 410.........420.........430.........440.........450.........460.........470..
 
   186...190.........200.........210.........220....... ..230.........
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Query Sequence  LFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYY. . . . . . . . . . . . . . . . . . . . . . . . . . RADDLEHKTALL
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Template Sequence  LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSKKTWPEI
Template Known Secondary structure 


TTT


SS
SS
TT
TT

B





TT
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   473......480.........490.........500.........510.........520.........530.........540.........550..
 
   240.........250.........260.........270.... .....280
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Query Sequence  VHLLKQPEATRSIVFVRKRERVHELANWLREAGIN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NCYLEG
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Template Sequence  VNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHG
Template Known Secondary structure  TT

S
S
TTTT




TTS
T
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T
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   618.620.........630.........640.........650.........660.........670.........680.........690.......
 
   281........290.........300.........310.........320..... ....330.........340... ......
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Query Sequence  EMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDM. . . . . . . . . PRSGDTYLHRIGRTARAG. . RKGTAI
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Template Sequence  GLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP. TRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI
Template Known Secondary structure  TS
TT

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   698.700.........710.........720.........730.. .......740.........750.........760.........770......
 
   350..
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Query Sequence  SLV
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Template Sequence  VMA
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   777..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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