Phyre 2 alignment of P21507 with c3oiyB

Job Description P21507
Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012

Rank 28 Aligned Residues 341

% Identity 16% Template c3oiyB_

PDB info PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima

Resolution 2.35 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	S	E	L	E	L	D	E	S	L	L	E	A	L	Q	D	K	G	F	T	R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	G	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I	L	T	P	T
Query Conservation
Alig confidence						.	.	.																																																						.	.	.	.	.	.	.
Template Conservation						.	.	.																																																						.	.	.	.	.	.	.
Template Sequence	W	N	E	Y	E	.	.	.	D	F	R	S	F	F	K	K	K	F	G	K	D	L	T	G	Y	Q	R	L	W	A	K	R	I	V	Q	G	K	S	F	T	M	V	A	P	T	G	V	G	K	T	T	F	G	M	M	T	A	L	W	L	A	.	.	.	.	.	.	.	R	K	G	K	K	S	A	L	V	F	P	T
Template Known Secondary structure						.	.	.											S	S														T	T	T								S	S		T	T														.	.	.	.	.	.	.	T	T	T								S	S
Template Predicted Secondary structure						.	.	.																																																						.	.	.	.	.	.	.
Template SS confidence
	61	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130

	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence	R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	.	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	D	R	M	L	D
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence	V	T	L	V	K	Q	T	L	E	R	L	Q	K	L	A	D	E	K	V	K	I	F	G	F	Y	S	S	M	K	K	E	E	K	E	K	F	E	K	S	F	E	E	D	D	Y	H	I	L	V	F	S	T	Q	F	V	S	K	N	R	E	K	L	S	Q	K	R	F	D	F	V	F	V	D	D	V	D	A	V	L	K
Template Known Secondary structure																	S	S								T	T	S															T			S																	T	T				S					S							T
Template Predicted Secondary structure
Template SS confidence
	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	S	R	N	I	D	T	L	L	M	M	V	G	I	P	E	E	I	I	R	K	A	F	S	T	I	K	Q	G	K	I	Y	E	R	P	K	N	L	K	P	G	I	L	V	V	S	S	A	T	A	K	P	R	G	I	R	P	L	L	F	R	D	L	L	N	F	T	V	G	R	L	V	S	V	A	R	N	I	T	H
Template Known Secondary structure	S											T	T															T	T							T	T										S	S							S	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E	G	R	V	N	V	L	V	A
Query Conservation
Alig confidence																			.	.	.	.	.																																	.	.	.	.	.
Template Conservation																			.	.	.	.	.																																	.	.	.	.	.
Template Sequence	V	R	I	S	S	R	S	K	E	K	L	V	E	L	L	E	I	F	.	.	.	.	.	R	D	G	I	L	I	F	A	Q	T	E	E	E	G	K	E	L	Y	E	Y	L	K	R	F	K	F	N	V	G	E	T	W	.	.	.	.	.	S	E	F	E	K	N	F	E	D	F	K	V	G	K	I	N	I	L	I	G
Template Known Secondary structure				S	S														.	.	.	.	.		S	S						S	S														T	T						S	S	.	.	.	.	.	S											T	T	S		S
Template Predicted Secondary structure																			.	.	.	.	.																																	.	.	.	.	.
Template SS confidence
	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.						.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340						.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																.	.
Query SS confidence																							.	.																.	.
Query Sequence	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F	N	F	D	M	P	.	.	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	.	.	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L	L	L	G	K	V	G	R	Y	I
Query Conservation																							.	.																.	.
Alig confidence												.											.	.																.	.
Template Conservation												.
Template Sequence	V	Q	A	Y	Y	V	D	L	P	E	R	.	I	K	Y	V	I	F	W	G	T	P	S	G	P	D	V	Y	T	Y	I	Q	A	S	G	R	S	S	R	I	L	N	G	V	L	V	K	G	V	S	V	I	F	E	E	D	E	E	I	F	E	S	L	K	T	R	L
Template Known Secondary structure		T	T						T	T	T	.								S			T	T	T											T	T					T	T
Template Predicted Secondary structure												.
Template SS confidence
	361	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions