Job Description P21507 Confidence 99.94% Date Wed Jan 25 15:20:41 GMT 2012 Rank 71 Aligned Residues 332 % Identity 18% Template c3mwyW_ PDB info PDB header:hydrolase Chain: W: PDB Molecule:chromo domain-containing protein 1; PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler Resolution 3.70 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	.	.	.	.	G	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I	L	T	P	T	R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																			.	.	.	.								.															.
Template Conservation																																																							.	.	.	.								.															.
Template Sequence		E	L	R	D	F	Q	L	T	G	I	N	W	M	A	F	L	W	S	K	G	D	N	G	I	L	A	D	E	M	G	L	G	K	T	V	Q	T	V	A	F	I	S	W	L	I	F	A	R	R	Q	N	G	P	.	.	.	.	H	I	I	V	V	P	L	.	S	T	M	P	A	W	L	D	T	F	E	K	W	A	.
Template Known Secondary structure					T														T	T	T									T	T	S	S	T	T															S			S		.	.	.	.							T	.	T	T												S	.
Template Predicted Secondary structure																																																							.	.	.	.								.															.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.					.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	F	S	E	.	.	.	.	.	.	.	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	D	R	M	L	D	M	G	F	A	Q	D	I	E	H	I
Query Conservation																										.	.	.	.	.	.	.
Alig confidence		.																								.	.	.	.	.	.	.															.	.																												.	.	.
Template Conservation		.																																													.	.																												.	.	.
Template Sequence		.	P	D	L	N	C	I	C	Y	M	G	N	Q	K	S	R	D	T	I	R	E	Y	E	F	Y	T	N	P	K	T	M	K	F	N	V	L	L	T	T	Y	E	Y	I	L	K	.	.	D	R	A	E	L	G	S	I	K	W	Q	F	M	A	V	D	E	A	H	R	L	K	N	A	E	S	S	.	.	.	L	Y	E
Template Known Secondary structure		.	T	T									S	S											S		S								S						T	T					.	.	T						T	S								T	T	G	G	G	G			S	S	S		.	.	.
Template Predicted Secondary structure		.																																													.	.																												.	.	.
Template SS confidence
			449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.				520	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q	W	Y	Y	R	A	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		S	L	N	S	F	K	V	A	N	R	M	L	I	T	G	T	P	L	Q	N	N	I	K	E	L	A	A	L	V	N	F	L	M	P	G	R	F	N	Q	D	E	E	Q	E	E	Y	I	H	D	L	H	R	R	I	Q	P	F	I	L	R	R	L	K	K	D	V	E	K	S	L	P	S	K	T	E	R	I	L	R	V
Template Known Secondary structure				T	T	S										S				S	S		S												S						T	T												T	T	G	G	G						G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
																																																																230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	P	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	S	D	V	Q	T	E	Y	Y	K	N	I	L	T	K	N	Y	S	F	S	L	L	N	I	M	N	E	L	K	K	A	S	N	H	P	Y	L	F	D	N	A	E	E	R	V	L	Q	K	F	M	T	R	E	N	V	L	R	G	L	I	M	S	S	G	K	M	V	L	L	D	Q	L	L	T	R	L	K	K	D
Template Known Secondary structure																						T															G	G	G	S	S	S												S										T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.				.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E	G	R	V	N	V	.	.	.	L	V	A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F	N	F	D
Query Conservation																																																								.	.	.
Alig confidence																																																								.	.	.
Template Conservation
Template Sequence		G	H	R	V	L	I	F	S	Q	M	V	R	M	L	D	I	L	G	D	Y	L	S	I	K	G	I	N	F	Q	R	L	D	G	T	V	P	S	A	Q	R	R	I	S	I	D	H	F	N	S	P	D	S	N	D	F	V	F	L	L	S	T	R	A	G	G	L	G	I	N	L	M	T	A	D	T	V	V	I	F	D
Template Known Secondary structure		T								S																T							S	T	T	S											T	T	S	S	T	T		S												T	T	T				T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.											.	.
Query SS confidence																							.	.											.	.
Query Sequence		M	P	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	R	K	.	.	G	T	A	I	S	L	V	E	A	H	.	.	D	H	L	L	L	G	K	V	G	R	Y	I	E	E
Query Conservation																							.	.											.	.
Alig confidence																							.	.											.	.
Template Conservation
Template Sequence		S	D	W	N	P	Q	A	D	L	Q	A	M	A	R	A	H	R	I	G	Q	K	N	H	V	M	V	Y	R	L	V	S	K	D	T	V	E	E	E	V	L	E	R	A	R	K	K	M	I	L
Template Known Secondary structure				S		S								T	T	T	S		S	S			S										T	T	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.