Return to main results Retrieve Phyre Job Id

Job DescriptionP21507
Confidence99.76%DateWed Jan 25 15:20:41 GMT 2012
Rank105Aligned Residues180
% Identity17%Templatec3llmB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60.........70.........80.........90.
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  DESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQ
Query Conservation     
   
   
      

  

  

 
  


 








   



  
             


 

  
  
Alig confidence 
























































..




















Template Conservation            
  


   
   
  
     


 
 





      

     ..        
    
    
  
Template Sequence  DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQ. . NDRAAECNIVVTQPRRISAVS
Template Known Secondary structure 
TSGGGGG
S

TTSS..TT
GGG
SS
Template Predicted Secondary structure 











..







Template SS confidence 















































































   375....380.........390.........400.........410.........420.........430. ........440.........450..
 
   92.......100.........110.........120.........130.........140.........150.........160. ........170
Predicted Secondary structure 
























.



Query SS confidence 





































































.








Query Sequence  VSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADR. MLDMGFAQD
Query Conservation                                       
 
                              .         
Alig confidence 

























....





















...














.








Template Conservation                            ....       
   
   
   
  ... 
  
  




 
 
      

 
Template Sequence  VAERVAFERGEEPGKSCGYSVRFESI. . . . LPRPHASIXFCTVGVLLRKLEA. . . GIRGISHVIVDEIHERDINTDFLLV
Template Known Secondary structure  TTT

TTSSTT....


SSS...

TT



TTS

Template Predicted Secondary structure 










....






...







Template SS confidence 















































































   453......460.........470........ .480.........490.........500 .........510.........520.....
 
   171........180.........190.........200
Predicted Secondary structure 










Query SS confidence 





























Query Sequence  IEHIAGETRWRKQTLLFSATLEGDAIQDFA
Query Conservation                              
 
Alig confidence 





























Template Conservation   

         



 


         
Template Sequence  VLRDVVQAYPEVRIVLXSATIDTSXFCEYF
Template Known Secondary structure 
TTSSSS

T
Template Predicted Secondary structure 








Template SS confidence 





























   526...530.........540.........550.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions