Job Description P21507 Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012 Rank 26 Aligned Residues 341 % Identity 19% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	T	T	F	S	E	L	E	L	D	E	S	L	L	E	A	L	Q	D	K	G	F	T	R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	G	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I
Query Conservation
Alig confidence																																																																			.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		K	I	N	P	F	T	G	R	E	F	T	P	K	Y	V	D	I	L	K	I	R	R	E	L	P	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	.	.	.	.	M	P	H	L	E	N	T	Q	V	A	C
Template Known Secondary structure		S	B		T	T	S	S	S	B													T	T	S	G	G	G	G	G												S								T	T	S	S														.	.	.	.		G	G	G	G	T
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																																																.
Query SS confidence																	.																																																																.
Query Sequence		L	T	P	T	R	E	L	A	M	Q	V	S	D	H	A	.	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	.
Query Conservation																	.																																																																.
Alig confidence																	.																						.	.	.	.	.	.																								.													.
Template Conservation																																							.	.	.	.	.	.																								.
Template Sequence		T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S	I	R	F	E	N	K	T	.	.	.	.	.	.	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	.	L	S	R	Y	S	C	I	I	L	D	E	A	H
Template Known Secondary structure				S																T	T			B	T	T	T						T	T					.	.	.	.	.	.		T	T																			T	T	.		T	T									G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.																								.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	M	L	D	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L
Query Conservation
Alig confidence																																									.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	D	A	E	K	F	Q	R	.	.	.	.	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V
Template Known Secondary structure		G																				T	T								S	S	S								.	.	.	.		T	T	S																			S	S			S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.												.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		V	H	L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	.	.	.	.	.	.	.	.	.	.	.	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E	G	R	V	N	.	.	.	.	.	V	L	V
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V	V	I
Template Known Secondary structure								S		S								S	S																																		T	T							G	G	G	G	S						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.																			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F	N	F	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																												.
Template Sequence		S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	.	P	G	K	C	F	R	L	Y	T	E	E	A	F	Q
Template Known Secondary structure				T					S				T	T																	T	T	T	T																				G	G	G	S	S	S	.	S						S	S
Template Predicted Secondary structure																																																												.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions