Job Description P21507 Confidence 99.95% Date Wed Jan 25 15:20:41 GMT 2012 Rank 67 Aligned Residues 317 % Identity 19% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.																																.	.
Query SS confidence																																						.	.	.	.	.																																.	.
Query Sequence		F	S	E	L	E	L	D	E	S	L	L	E	A	L	Q	D	K	G	F	T	R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	G	.	.	.	.	.	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	.	.	K	S	G	P	P	R
Query Conservation																																						.	.	.	.	.																																.	.
Alig confidence																																						.	.	.	.	.																																.	.
Template Conservation
Template Sequence		C	G	D	E	G	I	K	D	E	D	L	D	T	L	L	S	P	Y	H	H	V	P	R	Y	Y	Q	Q	I	A	I	N	R	A	V	Q	S	V	L	Q	G	K	K	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L	W	S	A	R	W	N	R	T	G	D	Y	R	K	P	R
Template Known Secondary structure						T			G	G	G					T																								T	T		S								T	T	S																T	T			S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	I	L	T	P	T	R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		I	L	F	L	A	D	T	F	T	P	F	G	D	A	R	H	K	I	E	G	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	R	E	I	Y	F	A	I	Y	Q	S	I	P	G	L	Y	K	E	.	.	F	P	Q	D	F	F	D	L	I	I	I	D	E
Template Known Secondary structure										T	T	T		S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S						G	G	G				G	G	G	G	.	.	S		T	T	S		S					S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																									260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		A	D	R	M	L	D	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q	W	Y	Y	R	A	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	H	.	.	.	.	.	.	.	.	.	.	.	W	R	E	I	L	E	Y	F	E	P	A	F	Q	I	G	X	T	A	T	P	L	R	E	D	N	R	D	T	Y	R	Y	F	G	N	P	I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V	H	R	V	I	S	E	V	D	A	T	K	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.								S	T	T	S							S	S		S		T	T	T							S		S		S												T	S	S											T	T					S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.												.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
											230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.											.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N	C	Y	L	E	G	E	M	.	.	.	.	.	.	.	.	.	.	V	Q	G	K	R	N	E	A
Query Conservation		.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	R	V	I	A	L	K	A	R	T	D	A	F	A	K	H	L	T	D	F	X	K	R	T	D	R	F	A	K	T	I	V	F	C	V	D	Q	E	H	A	D	E	X	R	R	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	R	V	T	S	E	E	G	K	I	G	K	G	H	L	S	R
Template Known Secondary structure											T																	T	T	S							S	S															T					T	T		T	T	S					S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.						.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		I	K	R	L	T	E	G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F	N	F	D	M	P	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	.	.	.	.	.	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L	L
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		F	Q	E	L	E	T	S	T	P	V	I	L	T	T	S	Q	L	L	T	T	G	V	D	A	P	T	C	K	N	V	V	L	A	R	V	V	N	S	X	S	E	F	K	Q	I	V	G	R	G	T	R	L	R	E	D	Y	G	K	L	W	F	N	I	I	D	Y	T	G	S	A	T	Q	N	F
Template Known Secondary structure					T	T										S	S	T	T	T	T	T				T	T								S													T	T	S				B	G	G	G	T	B	S								S	S	S					T
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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