Job Description P21507 Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012 Rank 36 Aligned Residues 267 % Identity 19% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	A	L	D	G	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I	L	T	P	T	R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A
Query Conservation
Alig confidence																																				.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		N	M	L	R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	.	.	.	.	.	.	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	.	G	L	P	V	R	Y	Q	T	G	N	E	I
Template Known Secondary structure		G	G	G	S	T	T									T	T	S		T	T	T	T												T	.	.	.	.	.	.	T									S											T	T	.	.	.	.	.	.	T	S										S
Template Predicted Secondary structure																																				.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	N	H	A	E	V	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	D	R	M	L	D	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																																															.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																																															.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	N	.	.	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.															S			.	.					S					S	S	T	T			S																T	T	S								S	S		T	T	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																																															.	.
Template SS confidence
															258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	D	P	F	P	D	S	N	A	P	I	H	D	L	Q	D	E	I	P	D	R	A	W	S	S	G	Y	E	W	I	T	E	.	.	.	Y	A	G	K	T	V	W	F	V	A	S	V	K	M	G	N	E	I	A	M	C	L	Q	R	A	G	K	K	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S				S	S											S	S			S	S								.	.	.			S							S															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
																	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.																		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E	G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	S	H	V	F	N	F	D	M	P	R	S	G	D	T	Y	L	H	R	I	G	R
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.																	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.																	.
Template Sequence		I	Q	L	N	R	K	S	Y	D	T	E	Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	.	N	F	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	T	S	A	S	A	A	Q	R	R	G	R
Template Known Secondary structure					S	T	T						G	G	G	.	.	.	.	S	S	S				S					S	S				.			S		S																S	S	S							S														T	T
Template Predicted Secondary structure																.	.	.	.																	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	R	A	G	R	K	G	T	A	I	S	L	V	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	R	N	P	N	Q	V	G	D	E	Y	H	Y	G	G
Template Known Secondary structure		S	S			T	T										S
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions