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Job DescriptionP21507
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank2Aligned Residues348
% Identity18%Templatec2v1xB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TVTTFSE. . LELDESLLEALQDK. GFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPR
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Template Sequence  SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL. . . . . . . . . . CSDGF
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GGGG

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   64.....70.........80.........90.........100.........110.........120........ .130...
 
   7980.........90.........100.........110.........120..... ....130....... ..140.......
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Query Sequence  ILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE. . . . . . NQDIVVATTGRL. . . . . LQYIKEENFD
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Template Sequence  TLVICPLISLMEDQLMVLKQL. . . . GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE
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   134.....140.........150.... .....160.........170.........180.........190.........200.........
 
   148.150.........160... ......170.........180.........190.........200.........210.........220...
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Query Sequence  CRAVETLILDEADRML. . . . DMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIH
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Template Sequence  ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYE
Template Known Secondary structure  TT
TGGGGSTTSTT

GGGGGG
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   210.........220.........230.........240.........250.........260.........270.........280.........
 
   224.....230.........240.........250.........260.........270.........280.........290.........300...
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Query Sequence  QWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLV
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Template Sequence  VRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV
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SSTTTTTT

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   290.........300.........310.........320.........330.........340.........350.........360.........
 
   304.....310.........320.........330.........340.........350.........360...
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Query Sequence  ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV
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Template Sequence  ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM
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   370.........380.........390.........400.........410.........420.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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