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Job DescriptionP21507
Confidence99.97%DateWed Jan 25 15:20:41 GMT 2012
Rank48Aligned Residues269
% Identity15%Templatec2qeqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  RDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAE
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Template Sequence  QITVLDLHPGAGKTRRILPQIIKEAINRRL. . . . . . RTAVLAPTRVVAAEMAEALRGLPIRYQTSAN. . . . . . . . . . . . .
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   188.190.........200.........210....... ..220.........230.........240........
 
   122.......130.........140.........150.........160.........170.........180.........190.........200.
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Query Sequence  VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAE
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Template Sequence  . . . GNEIVDVMCHATLTHRLMSPH. RVPNYNLFVMDEAHFTDPASIAARGYISTRVELGEAAAIFMTATPPG. . . . . . . .
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   254.....260.........270.... .....280.........290.........300.........310.........320.
 
   202.......210.........220.........230.........240.........250.........260.........270.........280.
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Query Sequence  RLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGE
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Template Sequence  . . . . . . . . . . TSDPFPESNAPISDLQTEIPDRAWNSGYEWITEYIG. . KTVWFVPSVKMGNEIALCLQRAGKKVIQLNRN
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   322.......330.........340.........350....... ..360.........370.........380.........
 
   282.......290.........300 .........310.........320.........330.........340.........350...
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Query Sequence  MVQGKRNEAIKRLTEGRVN. . . . VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVE
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Template Sequence  DDWDFVVTTDISEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRTGRNPSQAGDEYCYG
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   401........410.........420.........430.........440.........450.........460.........470......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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