Job Description P21507 Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012 Rank 25 Aligned Residues 334 % Identity 20% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	L	L	E	A	L	Q	D	K	G	F	T	R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	G	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I	L	T	P	T	R	E	L	A	M	Q	V
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		E	E	L	A	E	S	I	S	S	Y	A	V	G	I	L	F	P	P	Q	A	E	A	V	E	K	V	F	S	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	L	A	E	M	A	M	V	R	E	A	I	K	.	.	.	.	.	.	.	G	G	K	S	L	Y	V	V	P	L	R	A	L	A	G	E	K
Template Known Secondary structure													S						S	S	T							T	T		S							S	S																			.	.	.	.	.	.	.	T								S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	D	R	M	L	D	M	G	F	A	Q	D	I	E
Query Conservation
Alig confidence										.																			.	.	.
Template Conservation										.																			.	.	.
Template Sequence		Y	E	S	F	K	K	W	E	.	K	I	G	L	R	I	G	I	S	T	G	D	Y	E	S	R	D	E	.	.	.	H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	R	N	R	A	S	W	I	K	A	V	S	C	L	V	V	D	E	I	H	L	L	D	S	E	K	R	G	A	T	L	E
Template Known Secondary structure						G	G	G	G	.	T	T	T								S			S				T	.	.	.	T	G	G	G		S															T	T		S	S	G	G	G							T	T	G	G	G	G	G		T	T	T
Template Predicted Secondary structure										.																			.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	.	.	.	.	.	.	E	R	K	K	I	H	Q	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	P
Query Conservation																																															.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	V	T	K	M	R	R	M	N	K	A	L	R	V	I	G	L	S	A	T	A	P	N	V	T	E	I	A	E	W	L	D	A	D	Y	Y	V	S	D	W	R	P	V	P	L	V	E	G	V	L	C	E	G	T	L	E	L	F	D	G	A	F	S	T	S	R	R	V	K	F	E	E	L	V	E	E	C	V	A
Template Known Secondary structure												T	T											T	T									T										S	S									T	T							T	T						B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																															.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	G	G	V	L	V	F	E	S	T	R	R	G	A	E	K	T	A	V	K	L	S	A	I	T	A	K	Y	V	E	N	E	G	L	E	K	A	I	L	E	E	N	E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V	V	E	D	A	F	R	R
Template Known Secondary structure			T	S							S	S																	T	T												T	T			S												T	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																															.	.	.																			.	.
Query SS confidence																															.	.	.																			.	.
Query Sequence		G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F	N	F	D	M	.	.	.	P	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	.	.	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L	L	L
Query Conservation																															.	.	.																			.	.
Alig confidence														.	.	.															.	.	.																			.	.
Template Conservation														.	.	.
Template Sequence		G	N	I	K	V	V	V	A	T	P	T	L	.	.	.	V	N	L	P	A	R	R	V	I	V	R	S	L	Y	R	F	K	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A	G	R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	E	I	A
Template Known Secondary structure		T	S								T	T		.	.	.						S							S	S															T	T				T	T	T		S	S									S	S		T
Template Predicted Secondary structure														.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions