Job Description P21507 Confidence 95.85% Date Wed Jan 25 15:20:41 GMT 2012 Rank 170 Aligned Residues 139 % Identity 21% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I	L	T	P	T	R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	.
Query Conservation																																																																																	.
Alig confidence															.	.	.	.	.																														.	.	.																														.
Template Conservation															.	.	.	.	.																														.	.	.
Template Sequence		W	F	L	V	G	L	Q	G	S	G	K	T	T	.	.	.	.	.	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	.	.	.	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V
Template Known Secondary structure								T	T	S	S				.	.	.	.	.												T	T										S	S						.	.	.											T								T	T
Template Predicted Secondary structure															.	.	.	.	.																														.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
							123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	D	R	M	L	D	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T
Template Known Secondary structure									T		S										S	S																			S								S	S	S		S													S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions