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Job DescriptionP21507
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank10Aligned Residues360
% Identity31%Templatec2i4iA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: crystal structure of human dead-box rna helicase ddx3x
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDF. . . . . . . . . . . . .
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Template Sequence  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG
Template Known Secondary structure 
SSGGGS


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Query Sequence  . PRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDC
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Template Sequence  RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL
Template Known Secondary structure  TTBS
SB

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Query Sequence  RAVETLILDEADRMLDMGFAQDIEHIAGE. . . TRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW
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Template Sequence  DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGT. . . . SENITQK
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Query Sequence  YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT
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Template Sequence  VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT
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GGGT

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   419420.........430.........440.........450.........460.........470.........480.........490........
 
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Query Sequence  DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE
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Template Sequence  AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR. . NLGLATSFFNERNINITKDLLDLLV
Template Known Secondary structure  TTS



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   499500.........510.........520.........530.... .....540.........550.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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