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Job DescriptionP21507
Confidence99.69%DateWed Jan 25 15:20:41 GMT 2012
Rank111Aligned Residues394
% Identity19%Templatec1nl3B_
PDB info PDB header:protein transportChain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80.........90....
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Query Sequence  LLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSD
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Template Sequence  AREAAWRVLDQRPFDVQVMGAAALHLGN. . VAEMKTGEGKTLTCVLPAY. . . . . . . LNALAGNGVHIVTVNDYLAKRDSE
Template Known Secondary structure  S



TT
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TTS
T.......TTSS


SS
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   70.........80.........90....... ..100.........110...... ...120.........130.........140
 
   95....100.........110.........120.........130.........140......... 150.........160...
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Query Sequence  HARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCR. . . . . . . AVETLILDEADRML. . . .
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Template Sequence  WMGRVHRFLGLQVGVILATMTPDERRVAYN. . ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA
Template Known Secondary structure  TT



TT

..SS
TT
SSTTT






TTTGGG
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   141........150.........160.........170 .........180.........190.........200.........210........
 
   164.....170........
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Query Sequence  . . . . . . . . . . . . DMGFAQDIEHIAGET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK
Template Known Secondary structure  GS


S
GGGS
BTTTTTTT
TT
S
TT
STT

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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   179180.........190.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RWRKQTLLFSATLEGDA
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Template Sequence  ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE
Template Known Secondary structure 

BTTTSSS
B
SSS

B
TT


STTTT






TT
SS

GGG
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   299300.........310.........320.........330.........340.........350.........360.........370........
 
   196...200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINN
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Template Sequence  AAELHEIYKLGVVSI. PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH
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SS






SST

S
TTT


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   379380.........390... ......400.........410.........420.........430.........440.........450.......
 
   276...280.........290.........300.........310.....
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Query Sequence  CYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NVLNAKYHEQEATIIAVAGRRGG. . VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKE
Template Known Secondary structure 
SSSTTTSTT
..TT
STTS


TT

TT

TTTS
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   458.460.........470.........480 .........490.........500.........510.........520.........530.....
 
   316...320.........330.........340.........350...... ...360.........370......
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Query Sequence  . . . . . . . . . . . . DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD. . . . . . . HLLLGKVGRYIEEPIKARVI
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Template Sequence  EASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIE
Template Known Secondary structure  TTSSS

SSTTSSGGG

TTSTTTTT

TTS
B
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   377..380.........390.........400.........410.........420..
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Query Sequence  DELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRD
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Template Sequence  AKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRR
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   616...620.........630.........640.........650.........660.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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