Job Description P21507 Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012 Rank 9 Aligned Residues 360 % Identity 33% Template c1hv8B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		M	T	V	T	T	F	S	E	L	E	L	D	E	S	L	L	E	A	L	Q	D	K	G	F	T	R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	G	R	.	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I
Query Conservation																																												.
Alig confidence																																												.																									.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		V	E	Y	X	N	F	N	E	L	N	L	S	D	N	I	L	N	A	I	R	N	K	G	F	E	K	P	T	D	I	Q	X	K	V	I	P	L	F	L	N	D	E	Y	N	I	V	A	Q	A	R	T	G	S	G	K	T	A	S	F	A	I	P	L	I	E	L	V	.	.	.	.	.	N	E	N	N	G	I	E	A
Template Known Secondary structure					S	S	G	G	G	S	S													T			S															T		S								S	S	S	S													S	.	.	.	.	.		S	S	S	S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	T	P	T	R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	F	S	E	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		I	I	L	T	P	T	R	E	L	A	I	Q	V	A	D	E	I	E	S	L	K	G	N	K	N	L	K	I	A	K	I	Y	G	G	K	A	I	Y	P	Q	I	K	A	L	K	N	A	N	.	I	V	V	G	T	P	G	R	I	L	D	H	I	N	R	G	T	L	N	L	K	N	V	K	Y	F	I	L	D	E	A
Template Known Secondary structure						S																		S	S									T	T	S											T		S	.															T	T	S	S		G	G	G								T
Template Predicted Secondary structure																																																		.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	M	L	D	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		D	E	X	L	N	X	G	F	I	K	D	V	E	K	I	L	N	A	C	N	K	D	K	R	I	L	L	F	S	A	T	X	P	R	E	I	L	N	L	A	K	K	Y	X	G	D	Y	S	F	I	K	A	K	I	N	A	N	I	E	Q	S	Y	V	E	V	.	.	.	.	.	.	.	N	E	N	E	R	F	E	A
Template Known Secondary structure						T	T	T	T										T	S		S	S								S	S															S								S	T	T	T	S								.	.	.	.	.	.	.		G	G	G
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E	G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	C	R	L	L	K	N	K	E	F	Y	G	L	V	F	C	K	T	K	R	D	T	K	E	L	A	S	X	L	R	D	I	G	F	K	A	G	A	I	H	G	D	L	S	Q	S	Q	R	E	K	V	I	R	L	F	K	Q	K	K	I	R	I	L	I	A	T	D	V	X	S	R	G	I	D	V	N	D	L	N	C
Template Known Secondary structure								S	T	T								S	S												T	T	T	T								S	S	S															T	S	S	S						T	T								S			S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	N	F	D	M	P	R	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L	L	L	G	K	V	G	R	Y	I	E	E	P	I	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	N	Y	H	L	P	Q	N	P	E	S	Y	X	H	R	I	G	R	T	G	R	A	G	K	K	G	K	A	I	S	I	I	N	R	R	E	Y	K	K	L	R	Y	I	E	R	A	X	K	L	K	I	K	K
Template Known Secondary structure					S	S			S	S								S	T	T	T			T	T	S										S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions