Job Description P21507 Confidence 100.00% Date Wed Jan 25 15:20:41 GMT 2012 Rank 18 Aligned Residues 369 % Identity 20% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		D	E	S	L	L	E	A	L	Q	D	K	G	F	T	R	P	T	A	I	Q	A	A	A	I	P	P	A	L	D	G	.	.	.	.	.	.	R	D	V	L	G	S	A	P	T	G	T	G	K	T	A	A	Y	L	L	P	A	L	Q	H	L	L	D	F	P	R	K	K	S	G	P	P	R	I	L	I	L	T	P	T
Query Conservation																																.	.	.	.	.	.
Alig confidence																.																.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation																.																																															.	.	.	.	.	.	.
Template Sequence		G	K	L	A	E	E	F	I	K	S	L	P	F	K	.	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	Q	L	A	I	L	D	N	Y	.	.	.	.	.	.	.	E	A	G	F	Q	T	A	F	M	V	P	T
Template Known Secondary structure		T										S	S	S		.																		S	S	S										S	S	S	S														.	.	.	.	.	.	.			T	S							S
Template Predicted Secondary structure																.																																															.	.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.								.	.	.	.	.	420	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		R	E	L	A	M	Q	V	S	D	H	A	R	E	L	A	K	H	T	H	L	D	I	A	T	I	T	G	G	V	A	Y	M	N	H	A	E	V	F	S	E	.	.	.	.	N	Q	D	I	V	V	A	T	T	G	R	L	L	Q	Y	I	K	E	E	N	F	D	C	R	A	V	E	T	L	I	L	D	E	A	D	R
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.																	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence		S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	K	F	N	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	I	D	V	V	I	G	T	H	A	L	I	Q	E	D	V	.	.	.	.	.	H	F	K	N	L	G	L	V	I	I	D	E	Q	H	R
Template Known Secondary structure																	T		S	S								S	S	S														S	S									T	T							.	.	.	.	.			S									S
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.						.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	D	M	G	F	A	Q	D	I	E	H	I	A	G	E	T	R	W	R	K	Q	T	L	L	F	S	A	T	L	E	G	D	A	I	Q	D	F	A	E	R	L	L	E	D	P	V	E	V	S	A	N	P	S	T	R	E	R	K	K	I	H	Q	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L	V	H
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		F	E	A	.	.	.	.	.	.	.	.	.	.	L	M	N	K	G	K	M	V	D	T	L	V	M	S	A	T	P	I	P	R	.	.	.	S	M	A	L	A	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	Q	T	M	L	V	P	M	D	R	V	N	E	V	Y	E	F	V	R	Q
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.			S	S	S	S									S	S					.	.	.							T			S	S									S	S											S	S	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		502	.	.											.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	R	V	H	E	L	A	N	W	L	R	E	A	G	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R	N	E	A	I	K	R	L	T	E	G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		E	V	M	.	.	R	G	G	Q	A	F	I	V	Y	P	L	I	K	S	A	V	E	M	Y	E	Y	L	S	K	E	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	A	E	G	R	Y	D	I	L	V	S	T	T	V	I	E	V	G	I	D	V	P	R	A	N	V	M	V
Template Known Secondary structure			T	T	.	.	T	S			B			B													S	G	G	G	S				B					S	S	S			S		S								T	T	T	S	S	S	B				S	S				S		S			T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		574	.	.			.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		322	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		N	F	D	M	P	R	.	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L	L	L	G	K	V	G	R	Y	I	E	E	P	I	K	A	R	V	I	D	E	L	R	P	K	T	R	A	P	S	E	K	Q	T	G	K	P	S	K	K	V	L	A
Query Conservation								.
Alig confidence								.																																					.
Template Conservation																																													.
Template Sequence		I	E	N	P	E	R	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	G	Q	E	A	Y	C	F	L	V	V	G	D	V	G	E	E	A	M	E	R	L	.	R	F	F	T	L	N	T	D	G	F	K	I	A	E	Y	D	L	K	T	R	G	P	G	E	K	Q	H	G	L	S	G	F	K	V	A	D
Template Known Secondary structure		B		S		S	S	S		T	T								T	S			S	S	T	T									S										.					T				S										S	S								S	S			S
Template Predicted Secondary structure																																													.
Template SS confidence
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.		.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
		401	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	A	E	K	K	K	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	R	D	L	K	L	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		746	.	.	.	750	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions