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Job DescriptionP21507
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank32Aligned Residues326
% Identity25%Templatec1c4oA_
PDB info PDB header:replicationChain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb; PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40. ........50.........60.........70.........80.........90........
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Query Sequence  FTRPTAIQAAAIPPALDG. . . . . RDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARE
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Template Sequence  GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL. . . . . . . . . . GRPALVLAPNKILAAQLAAEFRE
Template Known Secondary structure  S



TTTT
S
TTS
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SS
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   7..10.........20.........30.........40.........50... ......60.........70......
 
   99100.........110...... ...120.........130.........140........ .150
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Query Sequence  LAKHTHLDIATITGGVAY. . . . . . . . . . . . . . . . . . . . . . . . . . . MNHAEVFSENQDIVVATTGRLLQYIKEENFDC. RA
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Template Conservation                                                           

                     
Template Sequence  LFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNL
Template Known Secondary structure 
TTS


GGGTS


GGGT



S


S
GGG
S





B
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   151........160.........170........
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Query Sequence  VETLILDEADRMLDMGFAQDIEHIAGET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VGFVLFPATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPG
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B

S
S



SSTT
S

TTGGGGT

TT
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   179180.........190.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RWRKQTLLFSATLEGDA
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Template Conservation                                                                                  
Template Sequence  EPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPF
Template Known Secondary structure  S



GGGGS
TT
TTTSS
GGGGGSS


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SSS

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   315....320.........330.........340.........350.........360.........370.........380.........390....
 
   196...200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINN
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Template Conservation      .......                          
   
               

             
       
Template Sequence  ELAH. . . . . . . SGRVVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRA
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S
S
TT





STTTT

SSTT

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   395... .400.........410.........420.........430.........440.........450.........460.......
 
   276...280.........290.........300.........310.........320....... ..330.........340.........350
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Query Sequence  CYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR. . . . . SGDTYLHRIGRTARAGRKGTAIS
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Template Conservation      
      
  

  
  
   


 
  
  




    

  
        
     
  

  
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Template Sequence  RYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR. GEVWL
Template Known Secondary structure 
TT

TTS
SS



TT


TTTTTTS
SGGGSGGGTTSTT.
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   468.470.........480.........490.........500.........510.........520.........530.........540. .....
 
   351........360.......
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Query Sequence  LVEAHDHLLLGKVGRYI
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Template Conservation              
    
Template Sequence  YADRVSEAMQRAIEETN
Template Known Secondary structure 
SS

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   547..550.........560...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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