Job Description P75693 Confidence 1.69% Date Thu Jan 5 12:13:12 GMT 2012 Rank 19 Aligned Residues 150 % Identity 8% Template c3ddlB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore Resolution 1.90 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	L	F	V	V	V	Q	T	S	L	A	S	G	R	R	A	G	V	L	T	G	L	G	V	A	L	G	D	A	F	Y	S	G	L	G	L	F	G	L	A	T	L	I	T	Q	C	E	E	I	F	S	L	I	R	I	V	G	G	A	Y	L	L	W	F	A	W	C	S	M	R	R	Q	S	T	P	Q	M	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L	G	D	T	I	Q	R	Q
Template Known Secondary structure												S																														T		S				S	S	S																						T	T	T						T	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	P	I	S	A	P	W	Y	V	F	F	R	R	G	L	I	T	D	L	S	N	P	Q	T	V	L	F	F	I	S	I	F	S	V	T	L	N	A	E	T	P	T	W	A	R	L	M	A	W	A	G	I	V	L	A	S	I	I	W	R	V	F	L	S	Q	A	F	S	L	P	A	V	R	R	A	Y	G	R
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	R	V	S	T	.	.	.	.	.	.	.	.	.	.	L	L	G	N	A	R	L	L	L	L	A	T	W	G	F	Y	P	I	A	Y	M	I	P	M	A	N	T	P	G	T	I	V	A	L	Q	V	G	Y	T	I	A	D	V	L	A	K	A	G	Y	G	V	L	I	Y	N	I	A	K	A	K	S	E	E	E
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.																						T	T																																									T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions