 |
Job Description | P77163 | Confidence | 3.02% | Date | Thu Jan 5 12:25:50 GMT 2012 |
Rank | 69 | Aligned Residues | 71 |
% Identity | 11% | Template | c3kzsD_ |
PDB info |
PDB header:hydrolase | Chain: D: PDB Molecule:glycosyl hydrolase family 5; |
PDBTitle: crystal structure of glycosyl hydrolase family 5 (np_809925.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
|
Resolution | 2.10 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | |
. | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
. | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | F | R | M | S | E | Q | P | R | . |
T | I | K | I | Y | N | L | L | A | G | T | N | E | F | I | G | E | G | D | A | Y | I | P | P | H | T | G | L | P | A | N | S | T | D | I | A | P | P | D | I | P | A | G | F | . |
V | A | V | F | N | S | D | E | S | S | W | H | L | V | E | D | H | R | G | K | T | V | Y | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   | . |   |   |   |
|
|   |
|
|   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |   |   |
|
|   |   |   |   |
|   | . |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
|
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
X | E | V | D | F | S | K | I | S | G | A | K | K | N | A | W | W | Y | T | T | K | D | G | K | L | E | Y | I | G | E | F | . |
. |
. |
. |
. |
. |
. |
D | N | G | V | H | K | F | Q | H | D | S | G | Y | S | S | G | N | D | H | V | L | I | V | V | D | S | S | K | . |
. |
. |
. |
. |
D | Y | V | K | K | D | C | Y | Q |
Template Known Secondary structure |   |
 |  |  |  | G | G | G | S | S |
| S |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  | S | S |  |  |  |  |
|
| S | S |
| T | T | S | S |
|
|  |  |  |  |  |  |  | T | T |
| . | . | . | . | . |
| S | S |
| T | T |
|
| S |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . |
|
|  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
411 | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
470 | . | . | . | . | . | . | . | . |
  |
  |   |
79 | 80 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
V | A | S | G | N |
Query Conservation |   |
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
Template Sequence |   |
I | D | T | H | E |
Template Known Secondary structure |   |
|
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
  |   |
479 | 480 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|