Job Description P76034 Confidence 98.15% Date Thu Jan 5 12:17:34 GMT 2012 Rank 24 Aligned Residues 153 % Identity 14% Template c3ecsD_ PDB info PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha Resolution 2.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																													.																												.	.	.	.	.	.	.
Query SS confidence																													.																												.	.	.	.	.	.	.
Query Sequence		E	T	R	M	M	S	N	Y	T	L	K	R	E	L	A	E	F	A	A	S	L	V	Q	P	G	E	T	.	I	F	I	E	N	G	S	S	N	A	L	L	A	R	T	L	G	E	Q	K	K	N	V	T	I	I	T	.	.	.	.	.	.	.	V	S	S	Y	I	A	H	L	L	K	D	A	P	C	E	V	I	L
Query Conservation																													.																												.	.	.	.	.	.	.
Alig confidence																													.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	F	L	R	R	I	S	L	S	R	N	K	I	A	D	L	C	H	T	F	I	K	D	G	A	T	I	L	T	H	A	Y	S	R	V	V	L	R	V	L	E	A	A	V	A	A	K	K	R	F	S	V	Y	V	T	E	S	Q	P	D	L	S	G	K	K	X	A	K	A	L	C	H	L	N	V	P	V	T	V
Template Known Secondary structure																					T	T			T	T							S															T	T											T	T	T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		L	G	G	V	Y	Q	K	K	S	E	S	M	V	G	P	L	T	R	Q	C	I	Q	Q	V	H	F	S	K	A	F	I	G	I	D	G	W	Q	P	E	T	G	F	T	G	R	D	M	M	R	T	D	V	V	N	A	V	L	E	K	E	C	E	A	I	V	L	T	D	S	S	K	F	G	A	V	H	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.												.	.																								.																												.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.												.	.																								.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	L	D	A	A	V	G	Y	I	X	E	K	.	.	A	D	L	V	I	V	G	A	E	G	V	V	E	N	G	G	I	I	N	K	I	G	T	.	N	Q	X	A	V	C	A	K	A	Q	N	K	P	F	Y	V	V	A	E	S	F	K	F	V	R	L	F	P	L	N	Q
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.		G	G	G					G	G	G	.	.		S							S				T	T	S						T	T		.										T	T									G	G	G	B		S				S	S	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.												.	.																								.
Template SS confidence
		178												.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
																							211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	S	I	G	P	V	E	R	F	N	R	V	I	T	D	S	K	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	D	V	P	D	K	F	K	Y	K	A	D	G	Q	D	L	K	E	E	H	P	W	V	D	Y	T	A	P	S	L	I	T	L	L	F	T	D	L	G	V
Template Known Secondary structure		G	G	S						S	S					S							S						G	G	G		S					T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions