|   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | V | Q | A | L | L | D | Q | L | R | A | Q | G | I | Q | D | E | Q | . |
. |
V | L | N | A | L | A | A | V | P | R | E | K | F | V | D | E | A | F | E | Q | K | A | W | D | N | I | A | L | P | I | G | Q | G | Q | T | I | S | Q | P | Y | M | V | A | R | M | T | E | L | L | E | L | T | P | Q | S | R | V | L | E | I |
Query Conservation |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   | . | . |
|   |   |
|   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |
|
|
|
|
Template Sequence |   |
K | E | Q | R | I | L | R | Y | V | Q | Q | N | A | K | P | G | D | P | Q | S | V | L | E | A | I | D | T | Y | C | T | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | E | W | A | M | N | V | G | D | A | K | G | Q | I | M | D | A | V | I | R | E | Y | S | P | S | L | V | L | E | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T |
|
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | |
|
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
. | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |
|
|  |  |  |
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | T | G | S | G | Y | Q | T | A | I | L | A | H | L | . |
. |
. |
V | Q | H | V | C | S | V | E | R | I | K | G | L | Q | W | Q | A | R | R | R | L | K | N | L | D | L | . |
H | N | V | S | T | R | H | G | D | G | W | Q | G | . |
. |
. |
. |
. |
. |
W | Q | A | R | A | P | F | D | A | I | I | V | T | A | A | P | P |
Query Conservation |   |
|   |
|
|
|   |   |
|   |   |
|
|   |   | . | . | . |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   | . |   |   |
|   |   |   |   |   |
|   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|   |   |   |   |
Template Sequence |   |
G | A | Y | C | G | Y | S | A | V | R | M | A | R | L | L | Q | P | G | A | R | L | L | T | M | E | M | N | P | D | Y | A | A | I | T | Q | Q | M | L | N | F | A | G | L | Q | D | K | V | T | I | L | N | G | A | S | Q | D | L | I | P | Q | L | K | K | K | Y | D | V | D | T | L | D | M | V | F | L | D | H | W | K | D |
Template Known Secondary structure |   |
|
| T | T | S |  |  |  |  |  |  |  | T | T |
|
| T | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| G | G | G |  |  |  |  |  | S |
|  |  |  |  | G | G | G |  |  |  |  | S |
|
|
|
|  |  |  |  |  |  |
| S |
| G | G |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
66 | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
  |
  |   |
153 | . | . | . | . | . | . | |
|
|
|
|
160 | . | . | . | . | . | . | . | . | . | 170 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | P | T | A | L | M | . |
. |
. |
. |
. |
T | Q | L | D | E | G | G | I | L | V | L |
Query Conservation |   |
  |   |   |   |   |   |   | . | . | . | . | . |   |   |
|   |
|
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|   |
Template Sequence |   |
R | Y | L | P | D | T | L | L | L | E | K | C | G | L | L | R | K | G | T | V | L | L | A |
Template Known Secondary structure |   |
G |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |
  |