|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
Query Sequence |   |
V | S | R | R | V | Q | A | L | L | D | Q | L | R | A | Q | G | . |
I | Q | D | E | Q | V | L | N | A | L | A | A | V | P | R | E | K | F | V | D | E | A | F | E | Q | K | A | W | D | N | I | A | L | P | I | G | Q | G | Q | T | I | S | Q | P | Y | M | V | A | R | M | T | E | L | L | . |
. |
E | L | T | P | Q | S | R |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
| . |
|   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
| . | . |   |
|   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |
|   |   |
|
|   |   |   | . | . | . | . |
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
|   |
|   |   |   |
|   |
|
|   |
|
Template Sequence |   |
G | G | A | S | H | S | E | L | I | H | N | L | R | K | N | G | I | I | K | T | D | K | V | F | E | V | M | L | A | T | D | R | S | H | Y | A | K | C | N | . |
. |
. |
. |
P | Y | M | D | S | P | Q | S | I | G | F | Q | A | T | I | S | A | P | H | M | H | A | Y | A | L | E | L | L | F | D | Q | L | H | E | G | A | K |
Template Known Secondary structure |   |
|
| S | S |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |  |  |  |  | T | S |
| G | G | G | T |
| S | S |
| . | . | . | . | T | T | S | S | S |
|  |  |  |  | T | T |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | T | S |
| T | T |
|  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | L | E | I | G | T | G | S | G | Y | Q | T | A | I | L | A | H | L | V | Q | . |
. |
. |
H | V | C | S | V | E | R | I | K | G | L | Q | W | Q | A | R | R | R | L | K | N | L | . |
. |
. |
. |
. |
D | L | H | N | V | S | T | R | H | G | D | G | W | Q | G | W | Q | A | R | A | P | F | D | A | I | I | V | T | A | A |
Query Conservation |   |
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |   | . | . | . |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . | . | . |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
Template Sequence |   |
A | L | D | V | G | S | G | S | G | I | L | T | A | C | F | A | R | M | V | G | C | T | G | K | V | I | G | I | D | H | I | K | E | L | V | D | D | S | V | N | N | V | R | K | D | D | P | T | L | L | S | S | G | R | V | Q | L | V | V | G | D | G | R | M | G | Y | A | E | E | A | P | Y | D | A | I | H | V | G | A | A |
Template Known Secondary structure |   |
 |  |  |  | T |
| T | T | S |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T |  |  |  |  | T | S | S |  |  |  |  |  | S |
| G | G | G |
|
| G | G | G |
|
|  |  |  |  |  |  |
| S | B |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
  |
  |   |
151 | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
. | . | . | 180 | . | . | . | . | |
. | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | P | E | I | P | T | A | L | M | T | Q | L | D | E | G | G | I | L | V | L | P | V | G | E | E | H | . |
. |
Q | Y | L | K | R | V | R | R | . |
R | G | G | E | F | I | I | D | T | V | E | A | V | R | F | V | P | L | V | K | G | E | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|   |   |
|   |   |   |   | . | . |   |   |   |   |   |   |   |
| . |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |
Template Sequence |   |
A | P | V | V | P | Q | A | L | I | D | Q | L | K | P | G | G | R | L | I | L | P | V | G | P | A | G | G | N | Q | M | L | E | Q | Y | D | K | L | Q | D | G | S | I | K | M | K | P | L | M | G | V | I | Y | V | P | L | T | D | K | E | K |
Template Known Secondary structure |   |
B | S | S |
|
|  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T | S |
|  |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |
|
|
| B |
|
|
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 |
  |