 |
Job Description | P0A7A5 | Confidence | 99.59% | Date | Thu Jan 5 11:05:12 GMT 2012 |
Rank | 119 | Aligned Residues | 109 |
% Identity | 16% | Template | c3p2kA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:16s rrna methylase; |
PDBTitle: structure of an antibiotic related methyltransferase
|
Resolution | 2.70 Å |
|
 |
  |   |
67 | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
|
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
. | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
| . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
| . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Query Sequence |   |
M | T | E | L | L | E | L | T | P | Q | S | R | V | L | E | I | G | T | G | S | G | Y | Q | T | A | I | L | A | H | L | V | Q | H | . |
. |
V | C | S | V | E | R | I | K | G | L | Q | W | Q | A | R | R | R | L | K | . |
. |
. |
. |
N | L | D | L | H | N | V | S | T | R | H | G | D | G | W | Q | G | W | Q | . |
A | R |
Query Conservation |   |
  |
|   |   |
|   |
|   |
|
|   |
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |   | . | . |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   | . |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |
Template Sequence |   |
E | L | T | E | I | I | G | Q | F | D | R | V | H | I | D | L | G | T | G | D | G | R | N | I | Y | K | L | A | I | N | D | Q | N | T | F | Y | I | G | I | D | P | V | K | E | N | L | F | D | I | S | K | K | I | I | K | K | P | S | K | G | G | L | S | N | V | V | F | V | I | A | A | A | E | S | L | P | F | E | L | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | S | S |  |  |  |  |  |  | T |
| T | T | S |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |
| S |
| G | G | G | G |  |  |  |  |  |  |  | T | S |
| G | G | G | T |
|
| S | S |  |  |  |  |
|
|
| T | T | S |
|
| G | G | G | T |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |
  |   |
140 | . | . | . | . | . | . | . | . | . | 150 | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | F | D | A | I | I | V | T | A | A | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | E | I | P | T | A | L | M | T | Q | L | D | E | G | G | I | L | V | L | P | V | G | E | E |
Query Conservation |   |
  |   |
|
|   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |
Template Sequence |   |
N | I | A | D | S | I | S | I | L | F | P | W | G | T | L | L | E | Y | V | I | K | P | N | R | D | I | L | S | N | V | A | D | L | A | K | K | E | A | H | F | E | F | V | T | T | Y | K |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |  |  | S |
|
|  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|