Job Description P0A978 Confidence 25.90% Date Thu Jan 5 11:09:33 GMT 2012 Rank 83 Aligned Residues 53 % Identity 25% Template c1go3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex Resolution 1.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.														40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	N	K	M	T	G	L	V	K	W	F	N	A	D	K	G	F	G	F	I	T	P	D	D	G	S	K	D	V	F	V	H	F	T	A	I	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	F	R	T	L	N	E	N	Q	K	V	E	F	S	I	E	Q
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.								.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.								.
Template Sequence		M	Y	E	L	I	E	G	E	V	V	D	V	V	E	.	.	.	F	G	S	F	V	R	L	.	G	P	L	D	G	L	I	H	V	S	Q	I	M	D	D	Y	V	S	Y	D	P	K	A	I	I	G	K	E	T	G	K	V	L	E	I	G	D	Y	V	R	A	R	I	V	A
Template Known Secondary structure		T	T												T	.	.	.	T							.	S	S	S						G	G	G	S		S	S												T	T	T						T	T
Template Predicted Secondary structure																.	.	.								.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions