Job Description P0AE78 Confidence 99.72% Date Thu Jan 5 11:22:44 GMT 2012 Rank 68 Aligned Residues 175 % Identity 13% Template c2qlvF_ PDB info PDB header:transferase/protein binding Chain: F: PDB Molecule:nuclear protein snf4; PDBTitle: crystal structure of the heterotrimer core of the s.2 cerevisiae ampk homolog snf1 Resolution 2.60 Å

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		53	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		D	T	R	D	M	L	E	G	V	M	D	I	.	A	D	Q	R	V	R	D	I	M	I	P	R	S	Q	M	I	T	L	K	R	N	Q	T	L	D	E	C	L	D	V	I	I	E	S	A	H	S	R	F	P	V	I	S	E	D	K	D	H	I	E	G	I	L	M	A	K	D	L	L	P	F	M	R	S	D	A	E
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		E	Q	Q	L	A	V	E	S	I	R	K	F	L	N	S	K	T	S	Y	D	V	L	P	V	S	Y	R	L	I	V	L	D	T	S	L	L	V	K	K	S	L	N	V	L	L	Q	N	S	I	V	S	A	P	L	W	D	S	K	T	S	R	F	A	G	L	L	T	T	T	D	F	I	N	V	I	Q	Y	Y	F	S
Template Known Secondary structure																T		B	G	G	G	G	S		S	S								T	T	S	B											T	T		S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		132	.	.	.	.	.	.	.																				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	S	M	D	K	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	A	V	V	V	P	E	S	K	R	V	D	R	M	L	K	E	F	R	S	Q	R	Y	H	M	A	I	V	I	D	E	F	G	G	V	S	G	L	V	T	I	E	D	I	L	E	L	I	V	G	E	I
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	D	K	F	E	L	V	D	K	L	Q	L	D	G	L	K	D	I	E	R	A	L	G	V	D	Q	L	D	T	A	S	I	H	P	S	R	P	L	F	E	A	C	L	K	M	L	E	S	R	S	G	R	I	P	L	I	D	Q	R	E	I	V	V	S	V	L	T	Q	Y	R	I	L	K	F	V	A	L	N	C
Template Known Secondary structure				S							S		B	S	T	T								S	S									B		T	T	S	B									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		193	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		E	D	E	Y	D	.	.	E	E	D	D	I	D	F	R	Q	L	S	R	H	T	W	T	V	R	A	L	A	S	I	E	D	F	N	E	A	F
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		R	E	T	H	F	L	K	I	P	I	G	D	L	N	I	I	T	Q	D	N	M	K	S	C	Q	M	T	T	P	V	I	D	V	I	Q	M	L
Template Known Secondary structure		G	G	G	G	G			S	B	G	G	G	T	T	T	S	B		S	S				B		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions