Job Description P0AE78 Confidence 99.82% Date Thu Jan 5 11:22:44 GMT 2012 Rank 35 Aligned Residues 128 % Identity 17% Template c2d4zB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:chloride channel protein; PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0 Resolution 3.10 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																																			.																													.	.
Query SS confidence																																																			.																													.	.
Query Sequence		G	V	M	D	I	A	D	Q	R	V	R	D	I	M	I	P	R	S	Q	M	I	T	L	K	R	N	Q	T	L	D	E	C	L	D	V	I	I	E	S	A	H	S	R	F	P	V	I	S	E	.	D	K	D	H	I	E	G	I	L	M	A	K	D	L	L	P	F	M	R	S	D	A	E	A	F	S	M	D	.	.
Query Conservation																																																			.																													.	.
Alig confidence																	.	.																																	.																													.	.
Template Conservation																	.	.
Template Sequence		S	S	A	N	K	Y	N	I	Q	V	G	D	I	M	V	.	.	R	D	V	T	S	I	A	S	T	S	T	Y	G	D	L	L	H	V	L	R	Q	T	K	L	K	F	F	P	F	V	D	T	P	D	T	N	T	L	L	G	S	I	D	R	T	E	V	E	G	L	L	Q	R	R	I	S	A	Y	R	R	Q	P	K
Template Known Secondary structure										B	T	T	S	S	S	B	.	.	S	S						T	T		B										T				S						S		T	T	T		B																				T	T	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.			.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
																																							137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	L	R	Q	A	V	V	V	P	E	S	K	R	V	D	R	M	L	K	E	F	R	S	Q	R	Y	H	M	A	I	V	I	D	E	F	G	G	V	S	G	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																																																										.
Template Sequence		Q	K	G	T	G	Q	V	A	S	R	F	E	E	M	L	T	L	E	E	I	Y	R	W	E	Q	R	E	K	N	V	V	V	N	F	E	T	C	R	I	D	Q	S	P	F	Q	L	V	E	G	T	S	L	Q	K	T	H	T	L	F	S	L	L	G	L	D	R	A	Y	V	T	S	M	.	G	K	L	V	G	V	V
Template Known Secondary structure							B				T	T	S	S			B												T	T	S	B			T	T	S	S						S					T	T		B												T		S							T	.	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.		.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	E	D	I	L	E	L	I	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	A	E	I	Q	A	A	I	E	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		760	.	.	.	.	.	.	.	.	.	770

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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