|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | L | I | S | N | D | L | R | D | G | D | K | L | P | H | R | H | V | F | N | G | M | G | Y | D | G | D | N | I | S | P | H | L | A | W | D | D | V | P | A | G | T | K | S | F | V | V | T | C | Y | D | P | D | A | P | T | G | S | G | W | W | H | W | V | V | V | N | L | P | A | D | T | R | V | L | P | Q | G | F |
Query Conservation |   |
  |   |
|
|
|   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |
|   |   |   |
|   |   |
|
|
|   |
|
|
|   |   |
|
|
|
|
|   |   |   |   |   |   |
|
|
|   |   |
|
|
|   |   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |
|   |   |   |
|   |   |
|
|
|   |
|
|
|   |   |
|   |
|
|
|   |   |   |   |   |   |
|
|
|   |   |
|
|
|   |   |   |   |   |
|   |   |
|   |
Template Sequence |   |
X | K | L | I | S | N | D | L | R | D | G | D | K | L | P | H | R | H | V | F | N | G | X | G | Y | D | G | D | N | I | S | P | H | L | A | W | D | D | V | P | A | G | T | K | S | F | V | V | T | C | Y | D | P | D | A | P | T | G | S | G | W | W | H | W | V | V | V | N | L | P | A | D | T | R | V | L | P | Q | G | F |
Template Known Secondary structure |   |
|  |  |  |
| S | S |
|
| T | T | S | B |
|
| G | G | G | B |
| S | S | T | T |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
| T | T |
|
|  |  |  |  |  |  |  |  | T | T | S | T | T | T | T |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |
| T | T | G |
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | G | L | V | A | M | P | D | G | V | L | Q | T | R | T | D | F | G | K | T | G | Y | D | G | A | A | P | P | K | G | E | T | H | R | Y | I | F | T | V | H | A | L | D | I | E | R | I | D | V | D | E | G | A | S | G | A | M | V | G | F | N | V | H | F | H | S | L | A | S | A | S | I | T | A | M | F | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|   |   |
|
|   |
|
|   |
|
|   |
|   |   |
|
|
|   |
|   |
|
|
|
|
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|   |   |   |   |
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |
|   |
|
|   |
|
|   |
|   |   |
|   |
|   |
|   |
|
|
|
|
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |   |   |
|   |
|   |
|   |
Template Sequence |   |
G | S | G | L | V | A | X | P | D | G | V | L | Q | T | R | T | D | F | G | K | T | G | Y | D | G | A | A | P | P | K | G | E | T | H | R | Y | I | F | T | V | H | A | L | D | I | E | R | I | D | V | D | E | G | A | S | G | A | X | V | G | F | N | V | H | F | H | S | L | A | S | A | S | I | T | A | X | F | S |
Template Known Secondary structure |   |
G | G | T | S | S |
|
|
| T | T |
|  |  |
| B |
| T | T | S | S | B | S |
|
|
| B |
|
| S | T | T |
|
|  |  |  |  |  |  |  |  |  |  | S | S | S |
|
| S |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
  |