Return to main results Retrieve Phyre Job Id

Job DescriptionP02921
Confidence85.44%DateThu Jan 5 10:57:37 GMT 2012
Rank6Aligned Residues79
% Identity13%Templatec3qnqD_
PDB info PDB header:membrane protein, transport proteinChain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Resolution3.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   374.....380.........390.........400... ......410.........420.........430.........440..
Predicted Secondary structure 








...........



Query SS confidence 





























. . . . . . . . . . .






































Query Sequence  MVVKGGSAFAAFFIAVVLGMIGYVPNVEQS. . . . . . . . . . . TQALLGMQFIMIALPTLFFMVTLILYFRFYRLNGDTLRR
Query Conservation       
  

  
 
 
    

       ...........      
      
  
   
  
     
         
Alig confidence 





























...........



































...
Template Conservation   

 
   
   
                       
        
       
  

  

   

  
 
   
 ...
Template Sequence  LIPFIVVPVVLTIVSYFAMEWGLVARPSGAAVTWTTPILFSGYLGSGGKISGVILQLVNFALAFVIYLPFLKIWDKQ. . .
Template Known Secondary structure  TTSS



S



TTS
TTTT
TTT...
Template Predicted Secondary structure 











...
Template SS confidence 















































































   349350.........360.........370.........380.........390.........400.........410.........420.....
 
   443......450........
Predicted Secondary structure 




Query SS confidence 















Query Sequence  IQIHLLDKYRKVPPEP
Query Conservation 
   
           
Alig confidence  ...












Template Conservation  ...    
        
Template Sequence  . . . KIAEEKGEAAAEN
Template Known Secondary structure  ...TT





Template Predicted Secondary structure  ...

Template SS confidence 















   426...430........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions