Job Description P02921 Confidence 99.88% Date Thu Jan 5 10:57:37 GMT 2012 Rank 3 Aligned Residues 373 % Identity 12% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Y	G	F	G	A	F	G	K	D	F	A	I	G	I	V	Y	M	Y	L	M	Y	Y	Y	T	D	V	V	G	L	S	V	G	L	V	G	T	L	F	L	V	A	R	I	W	D	A	I	N	D	P	I	M	G	W	I	V	N	A	T	R	S	R	W	G	K	F	K	P	W	I	L	I	G	T	L	A	N	S
Query Conservation
Alig confidence																									.																																							.	.	.	.	.
Template Conservation																									.																																							.	.	.	.	.
Template Sequence		L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	.	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	.	.	.	.	.	R	R	P	V	I	L	V	G	M	S	I	F	M
Template Known Secondary structure																									.			T	T	S	S	S	T	T																			T	T						T	T	S		.	.	.	.	.
Template Predicted Secondary structure																									.																																							.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	F	L	L	F	S	A	H	L	F	E	G	T	T	Q	I	V	F	V	C	V	T	Y	I	L	W	G	M	T	Y	T	I	M	D	I	P	F	W	S	L	V	P	T	I	T	L	D	K	R	E	R	E	Q	L	V	P	Y	P	R	F	F	A	S	L	A	G	F	V	T	A	G	V	T	L	P	F	V	N
Query Conservation
Alig confidence																.	.	.	.	.	.																													.
Template Conservation																.	.	.	.	.	.																													.
Template Sequence		L	A	T	L	V	A	V	T	T	S	S	L	T	V	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	.	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T
Template Known Secondary structure																.	.	.	.	.	.																													.	T	S	S			S																							S	S
Template Predicted Secondary structure																.	.	.	.	.	.																													.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	G	G	G	D	R	G	F	G	F	Q	M	F	T	L	V	L	I	A	F	F	I	V	S	T	I	I	T	L	R	N	V	H	E	V	F	S	S	D	N	Q	P	S	A	E	G	S	H	L	T	L	K	A	I	V	A	L	I	Y	K	N	D	Q	L	S	C	L	L	G	M	A	L	A	Y	N	V	A	S	N
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	.	.	.	.	.	.	.	.	.	.	.	.	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A
Template Known Secondary structure																										S	S	.	.	.	.	.	.	.	.	.	.	.	.				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.													.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	T	G	F	A	I	Y	Y	F	S	Y	V	I	G	D	A	D	L	F	P	Y	Y	L	S	Y	A	G	A	A	N	L	V	T	L	V	F	F	P	R	L	V	K	S	L	S	R	R	I	L	W	A	G	A	S	I	L	P	V	L	S	C	G	V	L	L	L	M	A	L	M	S	Y	H	N	V	V	L	I	V
Query Conservation
Alig confidence																																																																								.	.
Template Conservation																																																																								.	.
Template Sequence		F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	.	.	V	M	N	V	W	T	L	L
Template Known Secondary structure							S		S	S																	T														T	T	T	T																T	S	S	S	S	S							.	.
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	I	L	L	N	V	G	T	A	L	F	W	V	L	Q	V	I	M	V	A	D	I	V	D	Y	G	E	Y	K	L	H	V	R	C	E	S	I	A	Y	S	V	Q	T	M	V	V	K	G	G	S	A	F	A	A	F	F	I	A	V	V	L	G	M	I	G	Y	V	P	N	V	E	Q	S	T	Q	A	L	L
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	F	L	.	.	.	.	.	.	.	.	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	S	S	T	T						T						.	.	.	.	.	.	.	.																				S	T	T		T								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.									.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	Q	F	I	M	I	A	L	P	T	L	F	F	M	V	T	L	I	L	Y	F	R	F	Y	R	L
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L	C	W	L	P	L
Template Known Secondary structure		.	.	.	.	.	.																T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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