 |
Job Description | P0A9T0 | Confidence | 96.18% | Date | Thu Jan 5 11:11:17 GMT 2012 |
Rank | 357 | Aligned Residues | 86 |
% Identity | 20% | Template | c2v6bB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:l-lactate dehydrogenase; |
PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form)
|
Resolution | 2.50 Å |
|
 |
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
|
. | . | . | . | 180 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | G | I | I | G | Y | G | H | I | G | T | Q | L | G | I | L | A | E | S | L | G | M | . |
. |
Y | V | Y | F | Y | D | I | E | N | K | L | P | L | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | A | T | Q | V | Q | H | L | S | D | L | L | N | M | S | D | V | V | S | L | H | V | P | E | N | P | S | T |
Query Conservation |   |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |
|
|
|
| . | . |   |
|   |   |
|
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|
|
|
|   |
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |
|   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|
|
|
| . |
|   |   |
|
Template Sequence |   |
K | V | G | V | V | G | T | G | F | V | G | S | T | A | A | F | A | L | V | L | R | G | S | C | S | E | L | V | L | V | D | R | D | E | D | R | A | Q | A | E | A | E | D | I | A | H | A | A | P | V | S | H | G | T | R | V | W | H | G | G | H | S | E | L | A | D | A | Q | V | V | I | L | T | A | G | . |
A | E | S | R |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |
|
|  |  |  |  |
|
| G | G | G | G | T | T |
| S |  |  |  |  |
|
|
| . |
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
. | . | 100 | . |
  |
  |   |
218 | . | 220 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | N | M | M | G | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
K | E | I | S | L | M | K | P | G | S | L | L | I | N | A | S |
Query Conservation |   |
  |   |
|
|   |   | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|
|   |
|
|   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|   |
|
|
|
|
|
Template Sequence |   |
L | D | L | L | E | K | N | A | D | I | F | R | E | L | V | P | Q | I | T | R | A | A | P | D | A | V | L | L | V | T | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|