Job Description P0A9T0 Confidence 100.00% Date Thu Jan 5 11:11:17 GMT 2012 Rank 39 Aligned Residues 311 % Identity 18% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.										.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50												.	.	.	.	.	.	.	.	.					60	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																							.	.	.	.												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.																							.	.	.	.												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		I	K	F	L	L	V	E	.	.	.	.	.	.	.	.	.	G	V	H	Q	K	A	L	E	S	L	R	A	A	G	Y	T	N	I	E	F	H	K	.	.	.	.	G	A	L	D	D	E	Q	L	K	E	S	.	.	.	.	.	.	.	.	.	.	.	I	R	D	A	H	F	I	G	L	.	.	.	.	R	S	R
Query Conservation									.	.	.	.	.	.	.	.	.																							.	.	.	.												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																							.	.	.	.												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		M	K	I	A	I	P	K	E	R	R	P	G	E	D	R	V	A	I	S	P	E	V	V	K	K	L	V	G	L	G	F	E	V	I	V	E	Q	G	A	G	V	G	A	S	I	T	D	D	A	L	T	A	A	G	A	T	I	A	S	T	A	A	Q	A	L	S	Q	A	D	V	V	W	K	V	Q	R	P	M	T	A
Template Known Secondary structure											S	T	T					S												T	T							T	T	T	T	G	G	G	T									T	T					S	S						T	T		S											G
Template Predicted Secondary structure
Template SS confidence
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		T	H	L	T	E	D	V	I	N	A	A	E	K	L	V	A	I	G	C	F	C	I	G	T	N	Q	V	D	L	D	A	A	A	K	R	G	I	P	V	F	N	A	P	F	S	N	T	R	S	V	A	E	L	.	.	V	I	G	E	L	L	L	L	L	R	G	V	P	E	A	N	A	K	A	H	R	G	V	W	N
Query Conservation																																																							.	.
Alig confidence																																																							.	.
Template Conservation
Template Sequence		E	E	G	T	D	E	V	A	L	I	K	E	G	A	V	L	M	C	H	L	G	A	L	T	N	R	P	V	V	E	A	L	T	K	R	K	I	T	A	Y	A	M	E	L	M	P	R	I	S	R	A	Q	S	M	D	I	L	S	S	Q	S	N	L	A	G	Y	R	A	V	I	D	G	A	Y	E	F	A	R	A	F
Template Known Secondary structure		G	G	S	S		S	G	G	G	S		T	T									G	G	G		S									T	T						G	G	G					G	G	G	T	T	T																							S	S		S
Template Predicted Secondary structure
Template SS confidence
		881	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
		141	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure										.																																							.	.	.	.	.	.	.
Query SS confidence										.																																							.	.	.	.	.	.	.
Query Sequence		K	L	A	A	G	S	F	E	.	A	R	G	K	K	L	G	I	I	G	Y	G	H	I	G	T	Q	L	G	I	L	A	E	S	L	G	M	Y	V	Y	F	Y	D	I	E	N	K	L	.	.	.	.	.	.	.	P	L	G	N	A	T	Q	V	Q	H	L	S	D	L	L	N	M	S	D	V	V	S	L	H	V	P
Query Conservation										.																																							.	.	.	.	.	.	.
Alig confidence										.																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	M	M	M	T	A	A	G	T	V	P	P	A	R	V	L	V	F	G	V	G	V	A	G	L	Q	A	I	A	T	A	K	R	L	G	A	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	A	E	A	V	L	K	E	L	V	K	T	D	I	A	I	T	T	A	L
Template Known Secondary structure		S					S	S														S													T	T								S	S	T	T	S					T	T	T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		961	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
		213		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																											.	.																															.
Query SS confidence			.																											.	.																															.
Query Sequence		E	.	N	P	S	T	K	N	M	M	G	A	K	E	I	S	L	M	K	P	G	S	L	L	I	N	A	S	.	.	R	G	T	V	V	D	I	P	A	L	C	D	A	L	A	S	K	H	L	A	G	A	A	I	D	V	F	P	T	E	.	P	A	T	N	S	D	P	F	T	S	P	L	C	E	F	D	N	V	L
Query Conservation			.																											.	.																															.
Alig confidence			.																											.	.																															.																.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		I	P	G	K	P	A	P	V	L	I	T	E	E	M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	I	V	V	K	H	G	V	K	I	V	G	H	T	N	V	P	S	R	V	A	A	D	A	S	P	L	F	A	K	N	L	L	N	F	.	.	.	.
Template Known Secondary structure			T	T	S						S							T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T						T	T							S		G	G	G	G	G																.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		1067	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	H	I	G	G	S	T	Q	E	A	Q	E	N	I	G	L	E	V	A	G	K	L	I	K	Y	S	D	N	G	S	T	L	S	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	P	H	V	D	K	D	T	K	T	L	V	M	K	L	E	D	E	T	V	S	G	T	C	V	T	R	D	G	A	I	V	H	P	A	L
Template Known Secondary structure			G	G	G			T	T	T	T						T	T	S											T	T				S
Template Predicted Secondary structure
Template SS confidence
		1143	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions