 |
Job Description | P0A9T0 | Confidence | 96.90% | Date | Thu Jan 5 11:11:17 GMT 2012 |
Rank | 268 | Aligned Residues | 113 |
% Identity | 12% | Template | c1hrdA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:glutamate dehydrogenase; |
PDBTitle: glutamate dehydrogenase
|
Resolution | 1.96 Å |
|
 |
  |   |
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
. | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
S | F | E | A | R | G | K | K | L | G | I | I | G | Y | G | H | I | G | T | Q | L | G | I | L | A | E | S | L | G | M | Y | V | Y | . |
F | Y | D | I | E | N | K | L | P | L | G | N | A | T | Q | V | Q | H | L | S | D | L | L | N | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |
|
|
|
|   |
|   | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |
|   |   |
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |
|
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
N | D | T | L | V | G | K | T | V | A | L | A | G | F | G | N | V | A | W | G | A | A | K | K | L | A | E | L | G | A | K | A | V | T | L | S | G | P | D | G | Y | I | Y | D | P | E | G | I | T | T | E | E | K | I | N | Y | M | L | E | M | R | A | S | G | R | N | K | V | Q | D | Y | A | D | K | F | G | V | Q | F | F |
Template Known Secondary structure |   |
T |
|
| S | T | T |
|  |  |  |  |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  | T | T |  |  |  |  |
| T | T |
| S |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
| T |  |  |  |  |  |  |  | T |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
225 | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | |
|
. | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | D | V | V | S | L | H | V | P | E | N | P | S | T | K | N | M | M | G | A | K | E | I | S | L | M | K | P | G | . |
. |
S | L | L | I | N | A | S | R | G | T | V | V | D | I | P | A | L | C | D | A | L | A | S | K | H | L | A | G | A | A | I | D | V |
Query Conservation |   |
. | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
|   |
| . | . |
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |
|
|   |   |
|
|   |
|
|   |
|   |
|
|
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |   |
|
|
|   |
|   | . | . | . | . | . |
|   |   |   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|   |
|
|
|
|
|
|   |
| . |   |
|   |
|
|   |   |   |
|
|   |   |
|
|
|   | . |
|   |
|
|   |
Template Sequence |   |
P | G | E | K | P | W | G | Q | K | V | D | I | I | M | P | C | . |
. |
. |
. |
. |
A | T | Q | N | D | V | D | L | E | Q | A | K | K | I | V | A | N | N | V | K | Y | Y | I | E | V | A | N | M | P | . |
T | T | N | E | A | L | R | F | L | M | Q | Q | P | N | M | V | . |
V | A | P | S | K |
Template Known Secondary structure |   |
 | T |
|
| S | T | T | S |
|
| S |  |  |  |
|
| . | . | . | . | . | S |
| T | T |
| B |
|  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
| S | S | S |
| . | B |
|  |  |  |  |  |  |  |  |  |
| T | T |
|  | . |  |  |
|  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
| . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
305 | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | |
350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | |
. | . | . | . | 370 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|