Job Description P0A9T0 Confidence 100.00% Date Thu Jan 5 11:11:17 GMT 2012 Rank 7 Aligned Residues 311 % Identity 26% Template c1gdhA_ PDB info PDB header:oxidoreductase(choh (d)-nad(p)+ (a)) Chain: A: PDB Molecule:d-glycerate dehydrogenase; PDBTitle: crystal structure of a nad-dependent d-glycerate2 dehydrogenase at 2.4 angstroms resolution Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		K	I	K	F	L	L	V	E	G	V	H	Q	K	A	L	E	S	L	R	A	A	G	Y	T	N	I	E	F	H	K	G	A	L	D	D	E	Q	L	K	E	S	I	R	D	A	H	F	I	G	L	R	S	R	T	H	L	T	E	D	V	I	N	A	A	E	.	K	L	V	A	I	G	C	F	C	I	G	T	N	Q
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		K	K	K	I	L	I	T	W	P	L	P	E	A	A	M	A	R	A	R	E	S	Y	D	V	I	A	H	G	D	D	P	K	I	T	I	D	E	M	I	E	T	A	K	S	V	D	A	L	L	I	T	L	N	E	K	C	R	K	E	V	I	D	R	I	P	E	N	I	K	C	I	S	T	Y	S	I	G	F	D	H
Template Known Secondary structure								S	S												T	T	S							S	T	T												T	T		S						T	T	S		B								S		T	T								S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		V	D	L	D	A	A	A	K	R	G	I	P	V	F	N	A	P	F	S	N	T	R	S	V	A	E	L	V	I	G	E	L	L	L	L	L	R	G	V	P	E	A	N	A	K	A	H	R	G	V	W	N	K	.	.	.	L	A	A	G	S	F	E	A	R	G	K	K	L	G	I	I	G	Y	G	H	I	G	T	Q
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		I	D	L	D	A	C	K	A	R	G	I	K	V	G	N	A	P	H	G	V	T	V	A	T	A	E	I	A	M	L	L	L	L	G	S	A	R	R	A	G	E	G	E	K	M	I	R	T	R	S	W	P	G	W	E	P	L	E	L	V	G	E	K	L	D	N	K	T	L	G	I	Y	G	F	G	S	I	G	Q	A
Template Known Secondary structure		B								T	T									S																		T	T										T	T							T	T	T	T						T	T									S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		L	G	I	L	A	E	S	L	G	M	Y	V	Y	F	Y	D	I	E	N	K	L	P	L	G	N	.	.	.	.	A	T	Q	V	Q	H	L	S	D	L	L	N	M	S	D	V	V	S	L	H	V	P	E	N	P	S	T	K	N	M	M	G	A	K	E	I	S	L	M	K	P	G	S	L	L	I	N	A	S	R	G
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		L	A	K	R	A	Q	G	F	D	M	D	I	D	Y	F	D	T	H	R	A	S	S	S	D	E	A	S	Y	Q	A	T	F	H	D	S	L	D	S	L	L	S	V	S	Q	F	F	S	L	N	A	P	S	T	P	E	T	R	Y	F	F	N	K	A	T	I	K	S	L	P	Q	G	A	I	V	V	N	T	A	R	G
Template Known Secondary structure								T	T	T								S	S											T					S	S									S										T	T	T	T	T		B	S					T	T	S		T	T							S		G
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V	D	I	P	A	L	C	D	A	L	A	S	K	H	L	A	G	A	A	I	D	V	F	P	T	E	P	A	T	N	S	D	P	F	T	S	P	L	C	E	F	D	N	V	L	L	T	P	H	I	G	G	S	T	Q	E	A	Q	E	N	I	G	L	E	V	A	G	K	L	I	K	Y	S	D	N	G	S	T
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		D	L	V	D	N	E	L	V	V	A	A	L	E	A	G	R	L	A	Y	A	G	F	D	V	F	A	G	E	P	.	.	.	.	.	N	I	N	E	G	Y	Y	D	L	P	N	T	F	L	F	P	H	I	G	S	A	A	T	Q	A	R	E	D	M	A	H	Q	A	N	D	L	I	D	A	L	F	G	G	A	D	M
Template Known Secondary structure		G	G	B												T	S							S			T	T	T	T	.	.	.	.	.	S			T	T	G	G	G		T	T					S	S		T	T		S																				T	T	S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		322	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	A	L
Template Known Secondary structure		T	T	B
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions