Job Description P0C7L2 Confidence 99.16% Date Thu Jan 5 11:30:04 GMT 2012 Rank 100 Aligned Residues 246 % Identity 21% Template c3lmaC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. Resolution 1.99 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	A	A	I	P	L	R	E	L	L	V	R	N	P	R	L	D	A	E	C	I	D	D	V	I	L	G	C	A	N	Q	A	G	E	D	N	R	N	V	A	R	M	A	T	L	L	A	G	L	P	Q	S	V	S	G	T	T	I	N	R	L	C	G	S	G	L	D	A	L	G	F	A	A	R	A	I	K	A
Query Conservation
Alig confidence															.																.	.	.	.																		.	.	.	.
Template Conservation															.																.	.	.	.																		.	.	.	.
Template Sequence		R	K	L	X	E	D	A	V	Q	S	A	L	S	.	K	Q	N	L	K	K	E	D	I	D	I	F	L	A	G	.	.	.	.	D	L	L	N	Q	N	V	T	A	N	Y	V	A	R	H	L	K	.	.	.	.	I	P	F	L	C	L	F	G	A	C	S	T	S	X	E	S	I	A	I	S	S	A	L	I	D	G
Template Known Secondary structure															.		T	T			G	G	G		S						.	.	.	.		T	T		S	S	S	S									T	.	.	.	.									S	T	T															T
Template Predicted Secondary structure															.																.	.	.	.																		.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	G	D	L	L	I	A	G	G	V	E	S	M	S	R	A	P	F	V	M	G	K	A	A	S	A	F	S	R	Q	A	E	M	F	D	T	T	I	G	W	R	F	V	N	P	L	M	A	Q	Q	F	G	T	D	S	M	P	E	T	A	E	N	V	A	E	L	L	K	I	S	R	E	D	Q	D	S	F	A	L
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	A	K	R	A	L	A	A	T	S	S	H	N	A	T	A	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S		S										T	T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	Q	R	T	A	K	A	Q	S	S	G	I	L	A	E	E	I	V	P	V	V	L	K	N	K	K	G	V	V	T	E	I	Q	H	D	E	H	L	R	P	E	T	T	L	E	Q	L	R	G	L	K	A	P	F	R	A	N	G	V	I	T	A	G	N	A	S	G	V	N	D	G	A	A	A	L	I	I	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.									.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	R	Y	P	T	.	.	.	E	Y	G	G	Q	K	P	G	.	.	.	.	.	.	.	.	.	.	T	A	T	S	T	V	T	G	S	G	A	V	V	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T				G	.	.	.	G	G	T					S	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.									.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																								146	.	.	.	150	.				.	.	.	.	.	.	.	.											160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.														.	.	.	.																										.	.	.
Query SS confidence																										.	.	.	.														.	.	.	.																										.	.	.
Query Sequence		S	E	Q	M	A	A	A	Q	G	L	T	P	R	A	R	I	V	A	M	A	T	A	G	V	.	.	.	.	E	P	R	L	M	G	L	G	P	V	P	A	T	.	.	.	.	R	R	V	L	E	R	A	G	L	S	I	H	D	M	D	V	I	E	L	N	E	A	F	A	A	.	.	.	Q	A	L	G	V	L	R
Query Conservation																										.	.	.	.														.	.	.	.																										.	.	.
Alig confidence				.	.	.	.	.	.																	.	.	.	.														.	.	.	.																										.	.	.
Template Conservation				.	.	.	.	.	.
Template Sequence		Q	Q	.	.	.	.	.	.	P	G	G	I	K	I	T	S	A	T	V	G	R	V	I	D	L	G	I	T	D	S	Q	D	X	G	S	A	X	A	P	A	A	A	D	T	I	K	Q	H	L	E	D	L	G	R	T	P	D	D	Y	D	L	I	L	T	G	D	L	S	G	V	G	S	P	I	L	K	D	L	L	K
Template Known Secondary structure		S	S	.	.	.	.	.	.			S												B							T	T																						T			G	G	G		S					S	S
Template Predicted Secondary structure				.	.	.	.	.	.
Template SS confidence
		175	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.														390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	G	L	P	D	D	A	P	H	V	N	P	N	G	G	A	I	A	.	L	G	H	P	L	G	M	S	G	A	R	L	A	L	A	A	S	H	E	L	H	R	R	N	G	R	Y	A	L	C	T	M	C	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	Q	G	I	A	M	I	L	E	R
Query Conservation																					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.										.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		E	E	G	I	N	V	G	T	K	.	H	N	D	C	G	L	X	I	Y	T	P	D	S	G	C	A	C	S	A	V	V	T	F	A	H	I	F	K	E	I	E	A	G	R	L	N	R	V	L	V	V	A	T	G	A	L	L	S	P	T	I	I	Q	Q	K	E	S	I	P	C	I	A	H	G	V	V	F	E	R
Template Known Secondary structure			T	T				G	G	G	.				G	G	G	T	S	S																T							T	T	S		S																		T	T
Template Predicted Secondary structure											.
Template SS confidence
		249	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions