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Job DescriptionP0C7L2
Confidence99.95%DateThu Jan 5 11:30:04 GMT 2012
Rank57Aligned Residues293
% Identity24%Templatec2uv9B_
PDB info PDB header:transferaseChain: B: PDB Molecule:fatty acid synthase alpha subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the alpha subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
Resolution3.1 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20........ .30.........40..... ....50 .....
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Query Sequence  DGIRTPIGRYGGALSSVRADD. . . . . . . . . LAAIPLRELLVRNPRLD. . . . . AECID. . . . DVILG. . . . . . . . . . . . . .
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Template Sequence  VAGQIPTG. WDARRYGVPEDIIQQVDPVTLYVLVSVAEALL. SSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYK
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TT.

T

S
.TTT
SSGGGS
GGGSS

T
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   1160....... ..1170.........1180.........1190......... 1200.........1210.........1220.........1230.......
 
   56...60.........70.........80.........90.........100.........110.........120.....
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Query Sequence  . . . . . . . . . . CANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPF
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Template Sequence  DRYLDKPVQKDILQESFVNTMAAWVNMLLLSS. . TGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDF. . . . .
Template Known Secondary structure  TTTTT



S
TTGGGST


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B




GGGTTTS
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   1238.1240.........1250.........1260......... 1270.........1280.........1290.........1300.........1310
 
   126...130.........140.........150.........160.........170.........180.........190.........200.....
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Query Sequence  VMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QEEGSYEFANM. . . . . . . . . . . . . . . . . .
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   1311........1320.
 
   206...210.........220.........230.........240.........250.........260.........270.........280.....
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Query Sequence  VPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLKAPFRANGVITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAM
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Template Sequence  . . . . . . . . . . . . . . . . . . . GATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMT
Template Known Secondary structure  ...................T
B

TTT

TTSS

SSBTT


B
BB
T



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   1322.......1330.........1340.........1350.........1360.........1370.........1380..
 
   286...290.........
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Query Sequence  ATAGVEPRLMGLGP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  STATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFD
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S
S
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S
GGGGG




SS

GGGSTTSS

SSS



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   1383......1390.........1400.........1410.........1420.........1430.........1440.........1450.........1460..
 
   300.........310.........320....... ..330....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VPATRRVLERAGLSIHDMDVIELNEAFA. . . . . . . . AQALGVL
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Template Sequence  ETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQL
Template Known Secondary structure  TSTTTT
TTS
TTT

GGG



S
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   1463......1470.........1480.........1490.........1500.........1510.........1520.........1530.........1540..
 
   335....340.........350.... .....360.........370..... ....380..
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Query Sequence  RELGLPDDAPHVNPNGGAIA. LGHPLGMSGARLALAASHELH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RRNGRYA
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Template Sequence  KHLGRT. KGNAV. LGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKAF
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.TT

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T
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TT

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GGGGG
TT

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   1543..... .1550... ......1560.........1570.........1580.........1590.........1600.........1610.........1620
 
   383......390.........
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Query Sequence  LCTMCIGVGQGIAMILE
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Template Sequence  SVTSFGFGQKGAQAIGV
Template Known Secondary structure  TTT
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   1621........1630.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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