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Job DescriptionP0C7L2
Confidence99.81%DateThu Jan 5 11:30:04 GMT 2012
Rank76Aligned Residues249
% Identity15%Templatec2p8uB_
PDB info PDB header:transferaseChain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase, cytoplasmic; PDBTitle: crystal structure of human 3-hydroxy-3-methylglutaryl coa synthase i
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTIN. RL
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Template Sequence  GLGQAKMGFCTDREDINSLCMTVVQNLME. RNNLSYDCIGRLEVGTETIIDKS. KSVKTNLMQLFEESGNTDIEGIDTTN
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TT

.TT

GGG
S

S
SS.S
GGGTGGGT



B



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   50.........60.........70........ .80.........90.........100. ........110.........120.......
 
   90.........100.........110 .........120.........130.........140.........150.........160.......
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Query Sequence  CGSGLDALGFAARAIKAGDGD. . LLIAGGVESMSRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETA
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Template Sequence  AYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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STT

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   128.130.........140.........150.........160..
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  ENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLKAPFRANGV
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   248.250.........260.........270.........280.........290........ .
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Query Sequence  ITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAMATAGVEPRLMGLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . P
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Template Sequence  ATGNARPTGGVGAVALLIGPNAP. . . LIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI
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SSTTGGG
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   164.....170.........180...... ...190.........200.........210.........220.........230.........240
 
   300.........310.........320.........330.......
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Query Sequence  VPATRRVLERAGLSIHDMDVIELNEAFAAQALGVLREL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFM
Template Known Secondary structure  TT





GGG
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SS
TTGGG
GGGTT
GGGTT

GGG
TT
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   338.340.........350.........360.........370... ......380.........390
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Query Sequence  . . . . GLPDDAPHVNPNGGAIALGHPLGMSGARLALAASHE. . LHRRNGRYALCTMCIGV
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Template Sequence  KASSELFSQKTKASLLVSNQ. NGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSG
Template Known Secondary structure  TTTGGG.


GGGS
TT
TT
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   321........330.........340 .........350.........360.........370........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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