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Job DescriptionP0C7L2
Confidence100.00%DateThu Jan 5 11:30:04 GMT 2012
Rank26Aligned Residues288
% Identity24%Templatec2gqdB_
PDB info PDB header:transferaseChain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: the crystal structure of b-ketoacyl-acp synthase ii (fabf)2 from staphylococcus aureus
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2...... .10..... ....20........ .30.....
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Query Sequence  REAFICD. GIRTPIG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RYGGALSSVRADD. . . . . . . . . . . . . . . LAAIPLR
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Template Sequence  KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAAR
Template Known Secondary structure 

BTTBSSTT




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TTS
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   36...40.........50 .........60..... ....70.........80......
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Query Sequence  ELLVRNPRLDAECID. . . . DVILGCANQAGEDNR. . . . . . . . . . . . . . . . . . . . . . . . . NVARMATLLAGLPQSVSGTTI
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Template Sequence  EAVK. DAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGA. . KGPNGAT
Template Known Secondary structure  .T


STTTGGG
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T
GGGS
TTSTTT
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   85... .90.........100.........110.........120.........130.........140.........150.... .....160.
 
   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  NRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPET
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Template Sequence  VTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

GGGTTS
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   162.......170.........180.........190........
 
   167..170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  AENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLKAPF. . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MAIAGFSASRALSTNDD
Template Known Secondary structure  ...............................................................TT
B




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   199200.........210.....
 
   243......250.........260.........270.........280.........290 .........300.........310....
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Query Sequence  . . . RANGVITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAMATAGV. . . . . EPRLMGLGPVPATRRVLERAGLSI
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Template Sequence  IETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEP
Template Known Secondary structure  TTTS

TTBTT

SB
BB
TT





S
SSS

GGGT

G
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   216...220.........230.........240.........250.........260.........270.........280.........290.....
 
   315....320....... ..330.........340.........350.... .....360.........370.......
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Query Sequence  HDMDVIELNEAFA. . . . AQALGVLRELGLPDDAPHVNPNGGAIA. LGHPLGMSGARLALAASHELHRR. . . . . . . . . . . .
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Template Sequence  KDVQYLNAHGTSTPVGDLNEVKAIKNT. FGEAAKHL. KVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPD
Template Known Secondary structure  GG





S
.GGGGGGS.
T
B
TTTTT

BTT

SB
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   296...300.........310.........320.. .......330 .........340.........350.........360.........370...
 
   378.380.........390.........400
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Query Sequence  . . . . . . . . . . . . . . . NGRYALCTMCIGVGQGIAMILER
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Template Sequence  PECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKK
Template Known Secondary structure  TT

S


BSS



STTT
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   374.....380.........390.........400.........410.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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