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Job DescriptionP0C7L2
Confidence100.00%DateThu Jan 5 11:30:04 GMT 2012
Rank4Aligned Residues384
% Identity45%Templatec2d3tC_
PDB info PDB header:lyase, oxidoreductase/transferaseChain: C: PDB Molecule:3-ketoacyl-coa thiolase; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10......... 20.........30.........40.........50.........60.........70.........
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Query Sequence  MREAFICDGIRTPIGRYGG. ALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQ
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Template Sequence  PRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPH
Template Known Secondary structure  TTS


SSS
TTTT

TTTTS
GGG
SS
SGGGTTTTTSSS
T
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   80.........90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  SVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFG
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Template Sequence  TSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPH. . . . . . . . . . . . . . . . . MSLYAAKA
Template Known Secondary structure  TS

GGGTTS
STTTS
TTSS



GG.................GGGTS
GG
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   85....90.........100.........110.........120.........130......... 140.......
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  TDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVTEIQHDEHLRPETTLEQLRGLK
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Template Sequence  SGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALK
Template Known Secondary structure  GGSTT

TTSSTTTB


TT


S
TT

TT

TS
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   148.150.........160.........170.........180.........190.........200.........210.........220.......
 
   240...... ...250.........260.........270.........280.........290.........300.........310........
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Query Sequence  APFRANG. VITAGNASGVNDGAAALIIASEQMAAAQGLTPRARIVAMATAGVEPRLMGLGPVPATRRVLERAGLSIHDMD
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Template Sequence  PAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADID
Template Known Secondary structure 
SS
TTT



TTTB


T


S

GGGGGG
TTT

TTT
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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   319320.........330.........340.... .....350.........360.........370.........380.........390.......
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Query Sequence  VIELNEAFAAQALGVLRELGLPDDAP. HVNPNGGAIALGHPLGMSGARLALAASHELHRRNGRYALCTMCIGVGQGIAMI
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Template Sequence  FIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGGTFGLSTMCIGLGQGIATV
Template Known Secondary structure 

SBTT
GGGBSSS




TTTTT

TTT
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   308.310.........320.........330.........340.........350.........360.........370.........380.......
 
   398.400.
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Query Sequence  LERV
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Template Sequence  FERV
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   388.390.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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