Job Description P0A915 Confidence 97.95% Date Thu Jan 5 11:09:10 GMT 2012 Rank 20 Aligned Residues 157 % Identity 21% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.									.	.	.	.	.	.	.	90
Predicted Secondary structure																				.	.	.																													.	.														.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																													.	.														.	.	.	.	.	.	.	.
Query Sequence		A	G	E	F	F	M	R	A	G	S	A	T	V	R	P	T	E	G	.	.	.	A	G	G	T	L	G	S	L	G	G	F	S	V	T	N	N	T	Q	L	G	L	T	F	T	Y	M	A	T	.	.	D	N	I	G	V	E	L	L	A	A	T	P	F	.	.	.	.	.	.	.	.	R	H	K	I	G	T	R	A
Query Conservation																				.	.	.																													.	.														.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																													.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V
Template Known Secondary structure		S	S	S	B																				S	S	S																				B					G	G	G																						S	S	S
Template Predicted Secondary structure
Template SS confidence
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	G	D	I	A	T	V	H	H	L	P	P	T	L	M	A	Q	W	Y	F	G	D	A	S	S	K	.	F	R	P	Y	V	G	A	G	I	N	Y	T	T	F	F	D	N	G	F	N	D	H	G	K	E	A	G	L	S	D	L	S	L	K	D	S	W	G	A	A	G	Q	V	G	V	D	Y	L	I	N	R	D	W
Query Conservation																												.
Alig confidence																												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H
Template Known Secondary structure																								T	T	S																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B														G	G	G	B
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		907	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950																		.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	N	M	S	V	W	Y	M	D	I	D	T	T	A	N	Y	K	L	G	G	A	Q	Q	H	D	S	V	R	L	D	P	W	V	F	M	F	S	A	G	Y	R	F
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure													S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												B
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		983	.	.	.	.	.	.	990	.	.	.	.	.	.																.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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