Job Description P0A915 Confidence 99.76% Date Thu Jan 5 11:09:10 GMT 2012 Rank 10 Aligned Residues 150 % Identity 12% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	H	E	A	G	E	F	F	M	R	A	G	S	A	T	V	R	P	T	E	G	A	G	G	T	L	G	S	L	G	G	F	S	V	T	N	N	T	Q	L	G	L	T	F	T	Y	M	A	T	D	N	I	G	V	E	L	L	A	A	T	P	F	R	H	K	I	G	T	R	A	T	G	D	I	A	T	V	H	H
Query Conservation
Alig confidence								.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation								.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Sequence		M	P	K	D	N	T	.	W	Y	T	G	A	K	L	G	W	S	Q	Y	S	R	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	.	.	.	.	.	.	.	.	.	P	R	K	A	Q	G
Template Known Secondary structure					S	S		.											T	T			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S	S												S	S	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure								.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.															.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	P	T	L	M	A	Q	W	Y	F	G	D	A	S	S	K	F	R	P	Y	V	G	A	G	I	N	Y	T	T	F	F	D	N	G	F	N	D	H	G	K	E	A	G	L	S	D	L	S	L	K	D	S	W	G	A	A	G	Q	V	G	V	D	Y	L	I	N	R	D	W	L	V	N	M	S	V	W	Y	M	D
Query Conservation
Alig confidence													.																							.
Template Conservation													.																							.
Template Sequence		V	Q	L	T	A	K	L	G	Y	P	K	.	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	.	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N
Template Known Secondary structure												T	.	T		T	T	T													S	S	B			.				S	S	S						B																S	S	S		S	S	S											S
Template Predicted Secondary structure													.																							.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	T	T	A	N	Y	K	L	G	G	A	Q	Q	H	D	S	V	R	L	D	P	W	V	F	M	F	S	A	G	Y	R	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.																		.	.	140	.	.	.	.	.	.	.	.	.	150

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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