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Job DescriptionP07913
Confidence100.00%DateThu Jan 5 11:00:39 GMT 2012
Rank3Aligned Residues339
% Identity26%Templatec1pl6A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:sorbitol dehydrogenase; PDBTitle: human sdh/nadh/inhibitor complex
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFK
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Template Sequence  NLSLVVHG. PGDLRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKVGSSVKHLK
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   8.10..... ....20.........30.........40.........50.........60.........70.........80......
 
   81........90.........100.........110.. .......120.........130.........140.........150........
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Query Sequence  IGDRVSGEGHITCGHCRNCRGGRTHLCRNTIG. VGVNRPGCFAEYLVIPAFNAFKIPDNISDDLAAIFDPFGNAVHTAL.
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Template Sequence  PGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRR
Template Known Secondary structure  TT

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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   159160.........170.........180.........190.........200.........210.........220.........230.. ....
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Query Sequence  SFDLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKENLNDVMAELGMTEG. . FDVG
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Template Sequence  GGVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
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Query Sequence  LEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKVIFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRF
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Template Sequence  IECTGAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIREVDIKGVFRYCN. TWPVAISXLASKSVNVKPLVTHRF
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   247..250.........260.........270.........280.........290.........300. ........310.........320.....
 
   317..320.........330.........340.
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Query Sequence  SIDDFQKGFDAMRSGQSGKVILSWD
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Template Sequence  PLEKALEAFETFKKGLGLKIXLKCD
Template Known Secondary structure  GGGTT
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   326...330.........340.........350
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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