Phyre 2 alignment of P07913 with c1iz0A

Job Description P07913
Confidence 100.00% Date Thu Jan 5 11:00:39 GMT 2012

Rank 58 Aligned Residues 292

% Identity 21% Template c1iz0A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structures of the quinone oxidoreductase from2 thermus thermophilus hb8 and its complex with nadph

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence	M	K	A	L	S	K	L	K	A	E	E	G	I	W	M	T	D	V	P	V	P	E	L	G	H	N	D	L	L	I	K	I	R	K	T	A	I	C	G	T	D	V	H	I	Y	N	W	D	E	W	S	Q	K	T	I	P	V	P	M	V	V	G	H	E	Y	V	G	E	V	V	G	I	G	Q	E	V	K	G	F	K
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	X	K	A	W	V	L	K	R	L	G	G	P	L	E	L	V	D	L	P	E	P	E	A	E	E	G	E	V	V	L	R	V	E	A	V	G	L	N	F	A	D	H	L	X	R	L	G	A	Y	L	T	R	L	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	I	P	G	X	E	V	V	G	V	V
Template Known Secondary structure								S	T	T	S														T	T																					T		S	S	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.														.	.	.	.	60	.	.	.	.	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence	I	G	D	R	V	S	G	E	G	H	I	T	C	G	H	C	R	N	C	R	G	G	R	T	H	L	C	R	N	T	I	G	V	G	V	N	R	P	G	C	F	A	E	Y	L	V	I	P	A	F	N	A	F	K	I	P	D	N	I	S	D	D	L	A	A	I	F	D	P	F	G	N	A	V	H	T	A	L	.	.
Query Conservation																																																																															.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	G	R	R	Y	A	A	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	G	G	L	A	E	R	V	A	V	P	K	G	A	L	L	P	L	P	E	G	L	S	P	E	E	A	A	A	F	P	V	S	F	L	T	A	Y	L	A	L	K	R
Template Known Secondary structure	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	B	S						G	G	G						T	T								T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	68	.	70	.	.	.	.	.	.																												.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	F	D	L	V	G	E	D	V	L	V	S	G	A	G	P	I	G	I	M	A	A	A	V	A	K	H	V	G	A	R	N	V	V	I	T	D	V	N	E	Y	R	L	E	L	A	R	K	M	G	I	T	R	A	V	N	V	A	K	E	N	L	N	D	V	M	A	E	L	G	M	T	E	G	F	D	V	G	L	E
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence	A	Q	A	R	P	G	E	K	V	L	V	Q	A	A	A	G	A	L	G	T	A	A	V	Q	V	A	R	A	X	G	L	R	V	L	A	A	A	S	R	P	E	K	L	A	L	P	L	A	L	G	A	E	E	A	A	T	Y	A	E	V	P	E	R	A	K	A	W	G	.	.	.	.	.	.	G	L	D	L	V	L
Template Known Secondary structure	T	T			T	T						S	S	T	T	B													T	T								S	S	G	G	G	S						T	T		S					G	G	G								T	T	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.	.	.

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	S	G	A	P	P	A	F	R	T	M	L	D	T	M	N	H	G	G	R	I	A	M	L	G	I	P	P	S	D	M	S	I	D	W	T	K	V	I	F	K	G	L	F	I	K	G	I	Y	G	R	E	M	F	E	T	W	Y	K	M	A	A	L	I	Q	S	G	L	D	L	S	P	I	I	T	H	R	F	S	I
Query Conservation
Alig confidence																																																																	.			.
Template Conservation																																																																	.			.
Template Sequence	E	V	R	G	K	E	V	E	E	S	L	G	L	L	A	H	G	G	R	L	V	Y	I	A	P	I	P	P	L	R	L	X	R	R	N	L	A	V	L	G	F	W	L	T	P	L	L	R	E	G	A	L	V	E	E	A	L	G	F	L	L	P	R	L	.	G	R	.	E	L	R	P	V	V	G	P	V	F	P	F
Template Known Secondary structure			S		T	T						T	T															T	T					T	T												T	T													G	G	G	B	.	T	T	.	T	B										G
Template Predicted Secondary structure																																																																	.			.
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260		.	.	.	.	.	.	.	.	.	270	.	.

	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence	D	D	F	Q	K	G	F	D	A	M	R	S	G	Q	S	.	G	K	V	I	L	S	W
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence	A	E	A	E	A	A	F	R	A	L	L	D	R	G	H	T	G	K	V	V	V	R	L
Template Known Secondary structure	G	G								T	T		T	T			B
Template Predicted Secondary structure
Template SS confidence
	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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