Job Description P0AG93 Confidence 99.90% Date Thu Jan 5 11:28:29 GMT 2012 Rank 4 Aligned Residues 201 % Identity 14% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																			.																																															.
Query SS confidence																			.																																															.
Query Sequence		E	T	G	G	Q	V	L	G	S	Q	V	L	K	V	I	N	E	.	S	T	N	Q	N	A	A	V	K	R	I	E	F	V	G	P	S	V	G	A	D	L	A	Q	T	G	A	M	A	L	M	A	A	L	L	S	I	L	V	Y	V	G	F	R	F	E	.	W	R	L	A	A	G	V	V	I	A	L	A	H	D	V
Query Conservation																			.																																															.
Alig confidence																			.																			.																												.
Template Conservation																																						.
Template Sequence		D	S	V	G	G	I	L	R	S	T	G	R	Y	L	V	L	Y	L	I	I	V	V	G	M	A	Y	L	F	V	R	L	P	S	S	F	L	.	P	D	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V
Template Known Secondary structure																															S	S		B		S	S	.					T	T																			T	T		S	S	S					G	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.		.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	T	L	G	I	L	S	L	F	H	I	E	I	D	L	T	I	V	A	S	L	M	S	V	I	G	Y	S	L	N	D	S	I	V	V	S	D	R	I	R	E	N	F	R	K	I	R	R	G	T	P	Y	E	I	F	N	V	S	L	T	Q	T	L	H	R	T	L	I	T	S	G	T	T	L	M	V	I	L	M
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	.	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P
Template Known Secondary structure											T	T			B																														T	T	S	S		.			T	T									T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.		.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.
		262	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		L	Y	L	F	.	.	.	G	G	P	V	L	E	G	F	S	L	T	M	L	I	G	V	S	I	G	T	A	S	S	I	Y	V	A	S	A	L	A	L	K	L	G	M	K	R	E	H	M
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure				T	T		S	S	S																				T	T	T	T	S	S	S	S	S	S								T	S
Template Predicted Secondary structure
Template SS confidence
		989	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions