Job Description P0AG93 Confidence 99.88% Date Thu Jan 5 11:28:29 GMT 2012 Rank 5 Aligned Residues 195 % Identity 15% Template d1iwga7 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		G	E	T	G	G	Q	V	L	G	S	Q	V	L	K	V	I	N	E	S	T	N	Q	N	A	A	V	K	R	I	E	F	V	G	P	S	V	G	A	D	L	A	Q	T	G	A	M	A	L	M	A	A	L	L	S	I	L	V	Y	V	G	F	R	F	E	.	W	R	L	A	A	G	V	V	I	A	L	A	H	D	V
Query Conservation																																																																		.
Alig confidence																												.	.	.																																				.
Template Conservation																												.	.	.
Template Sequence		D	R	P	I	F	A	W	V	I	A	I	I	I	M	L	A	G	G	L	A	I	L	K	L	P	V	.	.	.	A	Q	Y	P	T	P	F	V	K	I	S	I	H	E	V	V	K	T	L	V	E	A	I	I	L	V	F	L	V	M	Y	L	F	L	Q	N	F	R	A	T	L	I	P	T	I	A	V	P	V	V	L
Template Known Secondary structure																							T	T	S			.	.	.		S	S																													T	T				T	T	T	T	T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	T	L	G	I	L	S	L	F	H	I	E	I	D	L	T	I	V	A	S	L	M	S	V	I	G	Y	S	L	N	D	S	I	V	V	S	D	R	I	R	E	N	F	R	K	I	R	R	G	T	P	Y	E	I	F	N	V	S	L	T	Q	T	L	H	R	T	L	I	T	S	G	T	T	L	M	V	I	L	M
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		L	G	T	F	A	V	L	A	A	F	G	F	S	I	N	T	L	T	M	F	G	M	V	L	A	I	G	L	L	V	D	D	A	I	V	V	V	E	N	V	E	R	V	M	A	E	E	G	.	L	P	P	K	E	A	T	R	K	S	M	G	Q	I	Q	G	A	L	V	G	I	A	M	V	L	S	A	V	F	V	P
Template Known Secondary structure										T	T	T			S																																	T	S	.			S							G	G	G	T																	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		262	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		L	Y	L	F	G	G	P	V	.	.	.	L	E	G	F	S	L	T	M	L	I	G	V	S	I	G	T	A	S	S	I	Y	V	A	S	A	L	A	L	K	L	G	M
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		M	A	F	F	G	G	S	T	G	A	I	Y	R	Q	F	S	I	T	I	V	S	A	M	A	L	S	V	L	V	A	L	I	L	T	P	A	L	C	A	T	M	L	K
Template Known Secondary structure		T	T				T	T	S																						T	T	T									S
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions