Job Description P0AG93 Confidence 99.96% Date Thu Jan 5 11:28:29 GMT 2012 Rank 2 Aligned Residues 264 % Identity 13% Template c3k07A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa Resolution 3.52 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.																					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	A	I	V	I	M	G	V	R	G	F	N	W	G	L	D	F	T	G	G	T	V	I	E	I	T	L	E	K	P	A	E	I	D	V	M	R	D	A	L	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	F	E	E	P	M	L	Q	N	F	G	S	S	H	D	I
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	L	F	V	T	S	A	V	G	G	A	M	V	G	E	T	V	E	G	I	A	R	Y	P	I	N	L	R	Y	P	Q	S	W	R	D	S	P	Q	A	L	R	Q	L	P	I	L	T	P	M	K	Q	Q	I	T	L	A	D	V	A	D	I	K	V	S	T	G	P	S	M	L	K	T	E	N	A	R	P	T	S
Template Known Secondary structure								T	T	T	T										T	T											G	G	G	G	S	S												T	T																			S						T	T
Template Predicted Secondary structure
Template SS confidence
		743	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		M	V	R	M	P	P	A	E	G	E	T	G	G	Q	V	L	G	S	Q	V	L	K	V	I	N	E	S	T	N	Q	N	A	A	V	K	R	I	E	F	V	G	P	S	V	G	A	D	L	A	Q	T	G	A	M	A	L	M	A	A	L	L	S	I	L	V	Y	V	G	F	R	F	E	.	W	R	L	A	A	G	V
Query Conservation																																																																										.
Alig confidence																																									.	.																																.
Template Conservation																																									.	.
Template Sequence		W	I	Y	I	D	A	R	D	R	D	M	V	S	V	V	H	D	L	Q	K	A	I	A	E	K	V	Q	L	K	P	G	T	S	V	A	F	S	G	Q	.	.	F	E	L	L	E	R	A	N	H	K	L	K	L	M	V	P	M	T	L	M	I	I	F	V	L	L	Y	L	A	F	R	R	V	G	E	A	L	L	I
Template Known Secondary structure								S	S	S																					T	T									.	.													T																		S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		823	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.			.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.										.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.
Query Sequence		V	I	A	L	A	H	D	V	I	I	T	L	G	I	L	S	L	F	H	I	E	I	D	L	T	I	V	A	S	L	M	S	V	I	G	Y	S	L	N	D	S	I	V	V	S	D	R	I	R	E	N	F	R	.	.	.	.	.	.	.	.	.	K	I	R	R	G	T	P	Y	E	I	F	N	V	S	L	T	Q	T
Query Conservation																																																							.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	S	V	P	F	A	L	V	G	G	I	W	L	L	W	W	M	G	F	H	L	S	V	A	T	G	T	G	F	I	A	L	A	G	V	A	A	E	F	G	V	V	M	L	M	Y	L	R	H	A	I	E	A	V	P	S	L	N	N	P	Q	T	F	S	E	Q	K	L	D	E	A	L	Y	H	G	A	V	L	R
Template Known Secondary structure			T	T															T	T					T	T																														S	S	G	G	G		S	S	S	S		S	T	T	T							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		901	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		L	H	R	T	L	I	T	S	G	T	T	L	M	V	I	L	M	L	Y	L	F	.	.	.	G	G	P	V	L	E	G	F	S	L	T	M	L	I	G	V	S	I	G	T	A	S	S	I	Y	V	A	S	A	L	A	L	K	L	G
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		V	R	P	K	A	M	T	V	A	V	I	I	A	G	L	L	P	I	L	W	G	T	G	A	G	S	E	V	M	S	R	I	A	A	P	M	I	G	G	M	I	T	A	P	L	L	S	L	F	I	I	P	A	A	Y	K	L	M	W
Template Known Secondary structure															T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		981	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions