Job Description P0AG93 Confidence 100.00% Date Thu Jan 5 11:28:29 GMT 2012 Rank 1 Aligned Residues 285 % Identity 37% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	G	R	K	V	Y	D	F	M	R	W	D	Y	W	A	F	G	I	S	G	L	L	L	I	A	A	I	V	I	M	G	V	R	G	F	N	W	G	L	D	F	T	G	G	T	V	I	E	I	T	L	E	K	P	A	E	I	D	V	M	R	D	A	L	Q	K	A	G	F	E	E	P	M	L	Q	N	F	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	V	D	P	R	F	N	F	M	G	P	A	R	Y	V	T	A	A	T	L	L	L	A	A	L	A	A	G	V	V	F	A	K	G	F	N	Y	S	I	D	F	T	G	G	T	A	Y	T	L	R	A	E	P	N	V	E	V	E	T	L	R	R	F	L	E	E	K	G	F	P	G	K	E	A	V	I	T	Q	V
Template Known Secondary structure									S	T	T	T	T																							T																			T	T												T	T	T	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	D	I	M	V	R	M	P	P	A	E	G	E	T	G	G	Q	V	L	G	S	Q	V	L	K	V	I	N	E	S	T	N	Q	N	A	A	V	K	R	I	E	F	V	G	P	S	V	G	A	D	L	A	Q	T	G	A	M	A	L	M	A	A	L	L	S	I	L	V	Y	V	G	F	R	F	E	W	R	L	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		Y	R	E	F	L	V	K	L	P	P	L	S	D	E	R	R	L	E	L	E	R	L	F	A	S	E	.	.	.	.	.	.	.	L	K	A	T	V	L	A	S	E	T	V	G	P	A	I	G	E	E	L	R	R	N	A	V	M	A	V	L	V	G	L	G	L	I	L	L	Y	V	A	F	R	F	D	W	T	F	G
Template Known Secondary structure										S																		.	.	.	.	.	.	.	S	S	S																																							S
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.								.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	V	V	I	A	L	A	H	D	V	I	I	T	L	G	I	L	S	L	F	H	I	E	I	D	L	T	I	V	A	S	L	M	S	V	I	G	Y	S	L	N	D	S	I	V	V	S	D	R	I	R	E	N	F	R	K	I	R	R	G	T	P	Y	E	I	F	N	V	S	L	T	Q	T	L	H	R	T	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	S	I	L	A	V	A	H	D	V	A	I	V	A	G	M	Y	S	L	L	G	L	E	F	S	I	P	T	I	A	A	L	L	T	I	V	G	Y	S	I	N	D	S	I	V	V	S	D	R	I	R	E	N	Q	K	L	L	R	H	L	P	Y	A	E	L	V	N	R	S	I	N	Q	T	L	S	R	T	V	M
Template Known Secondary structure																							T																																					S	S	S
Template Predicted Secondary structure
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	T	T	L	M	V	I	L	M	L	Y	L	F	G	G	P	V	L	E	G	F	S	L	T	M	L	I	G	V	S	I	G	T	A	S	S	I	Y	V	A	S	A	L	A	L	K	L	G	M	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	L	T	T	L	L	P	I	L	A	L	L	F	L	G	G	S	V	L	R	D	F	A	L	A	I	F	V	G	I	F	V	G	T	Y	S	S	I	Y	V	V	S	A	L	V	V	A	W	K	N	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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