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Job DescriptionP0AG93
Confidence99.95%DateThu Jan 5 11:28:29 GMT 2012
Rank3Aligned Residues212
% Identity14%Templatec1oy8A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
Resolution3.63 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  EEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVY
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Template Sequence  GSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK. . LPTGVGYDWSGN. . . . . . . . . . . QAPSLYAISLIVVFLC
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STT

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   812.......820.........830.........840.........850 .........860.. .......870........
 
   161..... ...170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  VGFRFE. WRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNV
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Template Sequence  LAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKE. GKGLIEATLD
Template Known Secondary structure  TTSS

SSSGGGTGGGSS

B
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   888.890.........900.........910.........920.........930.........940.........950...... ...960......
 
   240.........250.........260..... ....270.........280.........290.........300......
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Query Sequence  SLTQTLHRTLITSGTTLMVILMLYLF. . . GGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHM
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Template Sequence  AVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRK
Template Known Secondary structure  TTTSTT

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STSSSSSSTTT
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   967..970.........980.........990.........1000.........1010.........1020.........1030......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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