Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 7 Aligned Residues 350 % Identity 34% Template c3oo2A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Resolution 2.37 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		Q	A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	.	.	D	A	D	A	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E
Query Conservation																																																			.	.
Alig confidence																																																			.	.																													.
Template Conservation																																																																																	.
Template Sequence		R	S	A	Y	M	N	V	D	L	N	A	V	A	S	N	F	K	V	F	S	T	L	H	P	N	K	T	V	M	A	V	V	K	A	N	A	Y	G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	F	F	A	V	A	T	L	D	E	A	I	E	L	R	M	H	G	I	T	A	K	I	L	V	L	.
Template Known Secondary structure		S	S																					S	T	T	S												T	T												T	T							S	S									T	T	T			S						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																			.	.	.																							.
Query SS confidence																																			.	.	.																							.
Query Sequence		G	F	F	D	A	R	D	L	P	T	I	S	A	Q	H	F	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	.	.	.	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	.	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V	R	Q	P	V	N
Query Conservation																																			.	.	.																							.
Alig confidence																																			.	.	.																							.																	.
Template Conservation																																																																													.
Template Sequence		G	V	L	P	A	K	D	I	D	K	A	I	Q	H	R	V	A	L	T	V	P	S	K	Q	W	L	K	E	A	I	K	N	I	S	G	E	Q	E	K	K	L	W	L	H	I	K	L	D	T	G	M	G	R	L	G	I	K	D	T	K	T	Y	Q	E	V	I	E	I	I	Q	Q	Y	E	Q	L	.	V	F	E	G
Template Known Secondary structure		S				G	G	G							T	T																	T			S	S			S								B			S	S			S	S	B		S												T	T		T	T		.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P
Query Conservation																																.	.
Alig confidence														.																		.	.
Template Conservation														.
Template Sequence		V	F	T	H	F	A	C	A	D	E	P	G	.	D	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	N	E	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	S	L	L	M	D	C	Q	F	C	N	A	I	R	P	G	I	S	L	Y	G	Y	Y	P	S	E	Y	V	Q	Q	K	V	K	V	H	L	K	P
Template Known Secondary structure							S	S	T	T	S	S	S	.	S															T	S				S																T	T								G	G	G	G	T			S	S
Template Predicted Secondary structure														.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	R	E	V	P	I	V	G	R	V	A	M	D	M	I	C	V	D	L	G	P	Q
Query Conservation
Alig confidence																									.	.																											.																												.
Template Conservation																									.	.																											.																												.
Template Sequence		S	V	Q	L	I	A	N	V	V	Q	T	K	T	L	Q	A	G	E	S	V	S	Y	G	.	.	Y	T	A	T	D	P	T	T	I	A	L	L	P	I	G	Y	A	D	G	Y	L	R	I	M	Q	G	.	S	F	V	N	V	N	G	H	Q	C	E	V	I	G	R	V	C	M	D	Q	T	I	V	K	V	P	D	.
Template Known Secondary structure																	T	T		B					.	.		B		S	S								S			G	G	G	T			G	G	G	T	T	.						T	T							S				S	S								T	.
Template Predicted Secondary structure																									.	.																											.																												.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.					.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		A	Q	D	K	A	G	D	P	V	I	L	W	G	E	G	.	.	.	.	L	P	V	E	R	I	A	E	M	T	K	V	S	A	Y	E	L	I	T	R	L	T	S	R	V	A	M	K	Y	V	D
Query Conservation																	.	.	.	.
Alig confidence		.															.	.	.	.
Template Conservation		.
Template Sequence		.	Q	V	K	A	G	D	S	V	I	L	I	D	N	H	R	E	S	P	Q	S	V	E	V	V	A	E	K	Q	H	T	I	N	Y	E	V	L	C	N	L	S	R	R	L	P	R	I	Y	H	D
Template Known Secondary structure		.	T			T	T								S		S	S	S	T	T	S								T	T	S											T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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