Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 30 Aligned Residues 285 % Identity 16% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																														.
Query SS confidence																									.	.																														.
Query Sequence		A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	.	.	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L	L	L	E
Query Conservation																									.	.																														.
Alig confidence																									.	.													.	.	.	.														.
Template Conservation																																							.	.	.	.
Template Sequence		T	P	L	Y	V	Y	S	R	A	T	L	E	R	H	W	H	A	F	D	K	S	V	G	D	Y	P	H	L	I	C	Y	A	V	K	A	N	S	.	.	.	.	N	L	G	V	L	N	T	L	A	R	L	G	S	G	F	D	I	V	S	V	G	E	L	E	R	V	L	A	A	G	G	D	P	S	K	V	V	F	S
Template Known Secondary structure		S	S																				T		S	S								G	G	G			.	.	.	.											T	T						S	S										T	T			G	G	G
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.															.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.														.																		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.														.																		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	F	.	D	A	R	D	L	P	T	I	S	A	Q	H	F	.	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	.	.	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y
Query Conservation					.														.																		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.														.																		.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	G	K	T	E	A	E	M	K	R	A	L	Q	L	K	I	K	C	F	N	V	E	S	E	P	E	L	Q	R	L	N	K	V	A	G	E	L	G	V	K	A	P	I	S	L	R	I	N	P	D	V	D	A	K	T	H	P	Y	I	S	T	G	L	R	D	N	K	F	G	I	T	F	D	R	A	A	Q	V	Y
Template Known Secondary structure			T	T												T	T		S						S															T									B						T	T	T											S	S		S	B		G	G	G
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.				.
Predicted Secondary structure																																														.	.	.	.	.	.											.	.	.	.	.												.	.	.
Query SS confidence																																														.	.	.	.	.	.											.	.	.	.	.												.	.	.
Query Sequence		H	R	L	T	Q	C	K	N	V	R	Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	.	.	.	.	.	G	I	L	L	W	P	Q	S	H	F	D	.	.	.	W
Query Conservation																																														.	.	.	.	.	.											.	.	.	.	.												.	.	.
Alig confidence											.												.																							.	.	.	.	.	.											.	.	.	.	.												.	.	.
Template Conservation											.												.
Template Sequence		R	L	A	H	S	L	P	N	L	.	D	V	H	G	I	D	C	H	I	G	S	.	Q	L	T	A	L	A	P	F	I	D	A	T	D	R	L	L	A	L	I	D	S	L	K	A	E	G	I	H	I	R	H	L	D	V	G	G	G	L	S	E	Y	A	K	A	L	L	D	R	L	E	R	H	R	D	L	E	L	I
Template Known Secondary structure							S	T	T		.												.				S																					T	T										S													G	G	G		T	T	S
Template Predicted Secondary structure											.												.
Template SS confidence
		184	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	P	G	I	I	L	Y	G	V	S	P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	P	G	R	A	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	A	G	V	L	V	T	K	V	E	F	L	K	H	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	N	F	A	I	I	D	A	A	M	N	D	L	I	W	Q	D	I	I	P	L	R	P
Template Known Secondary structure					S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G														S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							S			T	T	T									S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.																	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.																.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		V	L	V	N	G	R	E	V	P	I	V	G	R	V	A	M	.	.	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G
Query Conservation																		.	.
Alig confidence																		.	.									.			.
Template Conservation																												.			.
Template Sequence		R	Q	G	E	A	Q	T	Y	D	L	V	G	P	V	C	E	T	S	D	F	L	G	K	D	R	D	.	L	V	.	L	Q	E	G	D	L	L	A	V	R	S
Template Known Secondary structure				S										S	S	S		T	T									.			.			T	T						S	S
Template Predicted Secondary structure																												.			.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.		.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions