Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 26 Aligned Residues 310 % Identity 15% Template c3llxA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																											.	.																														.	.
Query SS confidence																											.	.																														.	.
Query Sequence		M	Q	A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	.	.	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L
Query Conservation																											.	.																														.	.
Alig confidence																											.	.										.	.	.	.	.																.	.																			.
Template Conservation																																						.	.	.	.	.																																				.
Template Sequence		P	D	T	P	Y	L	L	I	D	E	A	K	L	K	S	N	I	N	Y	L	K	Q	R	V	E	S	L	G	S	H	L	R	P	H	L	T	.	.	.	.	.	L	R	T	L	E	A	A	G	Y	L	L	D	S	K	S	A	P	A	T	V	S	T	L	A	E	A	E	A	Y	A	K	A	G	Y	T	.	D	L	L
Template Known Secondary structure		S		S	S																							T	T			B			B			.	.	.	.	.			B									S	S	T	T	S					S	S										T	T			.
Template Predicted Secondary structure																																						.	.	.	.	.																																				.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																		.	.	.	.																					.	.
Query SS confidence																		.	.	.	.																					.	.
Query Sequence		L	L	E	G	F	F	D	A	R	D	L	P	T	I	S	A	.	.	.	.	Q	H	F	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	.	.	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	E	Q	A	E	A	F	Y	H	R	L	T	Q	C	K	N	V
Query Conservation																		.	.	.	.																					.	.
Alig confidence																		.	.	.	.																					.	.																									.	.
Template Conservation																																																																				.	.
Template Sequence		Y	A	V	G	I	A	P	A	K	L	K	R	V	A	A	L	R	Q	Q	G	I	N	L	H	I	L	L	D	N	I	T	Q	A	Q	A	V	V	D	Y	A	A	E	F	G	Q	D	F	S	V	F	I	E	I	D	S	D	D	H	R	G	G	I	K	P	S	D	.	.	S	K	L	L	T	I	A	K	T	L	G	E
Template Known Secondary structure								G	G	G										T	T									S															T									B		S	S	S	S	S	S		B		T	T		.	.	T										G	G
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																								.	.	.	.	.	.																			.
Query SS confidence														.	.	.	.	.																								.	.	.	.	.	.																			.
Query Sequence		R	Q	P	V	N	I	V	S	H	F	A	R	.	.	.	.	.	A	D	E	P	K	C	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	.	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S
Query Conservation														.	.	.	.	.																								.	.	.	.	.	.																			.
Alig confidence			.											.	.	.	.	.																								.	.	.	.	.	.																			.
Template Conservation			.
Template Sequence		H	.	F	T	G	L	X	T	H	A	G	G	S	Y	A	C	N	T	E	Q	G	L	K	N	F	A	K	Q	E	C	D	A	V	R	I	A	R	N	N	L	E	T	A	G	I	H	C	A	I	T	S	V	G	S	T	P	T	A	H	F	G	E	D	F	S	D	I	S	E	V	R	A	G	V	Y	T	T	F	D	L
Template Known Secondary structure		G	.									G	G	G	G	G			S																									T	T																		S			T	T		S						G	G	G	T
Template Predicted Secondary structure			.
Template SS confidence
		164		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	R	E	V	P	I	V
Query Conservation
Alig confidence													.	.																																																											.	.	.	.	.	.	.
Template Conservation													.	.																																																											.	.	.	.	.	.	.
Template Sequence		V	X	K	N	I	G	V	C	D	F	S	.	.	H	I	A	X	S	V	V	T	T	V	I	G	H	N	K	E	K	N	W	L	L	T	D	S	G	W	X	A	L	S	R	D	S	G	T	A	G	Q	N	R	D	F	G	Y	G	Q	V	C	K	I	D	G	S	V	L	D	G	L	.	.	.	.	.	.	.	C	V
Template Known Secondary structure							T	S			G	G	.	.	G														T	T	T	T					S								S			G	G	G	G	S	S	S			B	T						T	T	S							.	.	.	.	.	.	.		B
Template Predicted Secondary structure													.	.																																																											.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.								.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		G	R	V	A	M	D	M	I	C	V	D	L	G	P	.	.	.	Q	A	Q	D	K	A	G	D	P	V	I	L	W	G	E	G
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		N	S	T	S	Q	E	H	G	V	I	E	L	S	D	A	Y	Q	L	E	D	F	P	V	G	H	Q	L	R	I	X	P	N	H
Template Known Secondary structure						S	S								T	T			G	G	G	S		T	T								S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions