Job Description P0A6B4 Confidence 100.00% Date Thu Jan 5 11:02:45 GMT 2012 Rank 22 Aligned Residues 310 % Identity 17% Template c3gwqB_ PDB info PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																											.	.																														.	.
Query SS confidence																											.	.																														.	.
Query Sequence		M	Q	A	A	T	V	V	I	N	R	R	A	L	R	H	N	L	Q	R	L	R	E	L	A	P	.	.	A	S	K	M	V	A	V	V	K	A	N	A	Y	G	H	G	L	L	E	T	A	R	T	L	P	D	A	D	A	.	.	F	G	V	A	R	L	E	E	A	L	R	L	R	A	G	G	I	T	K	P	V	L
Query Conservation																											.	.																														.	.
Alig confidence																											.	.											.	.	.	.																.	.																			.
Template Conservation																																							.	.	.	.																																				.
Template Sequence		V	S	L	P	A	A	V	L	Y	A	D	R	V	E	H	N	L	K	W	X	Q	A	F	V	A	E	Y	G	V	K	L	A	P	H	G	K	T	.	.	.	.	T	X	A	P	Q	L	F	R	R	Q	L	E	T	G	A	W	G	I	T	L	A	T	A	H	Q	V	R	A	A	Y	H	G	G	V	S	.	R	V	L
Template Known Secondary structure		S		S	S																						S	S	S						B		T	T	.	.	.	.	T												T	T							S	S										T	T			.
Template Predicted Secondary structure																																							.	.	.	.																																				.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																				.	.																							.
Query SS confidence																			.	.	.	.	.	.																				.	.																							.
Query Sequence		L	L	E	G	F	F	D	A	R	D	L	P	T	I	S	A	Q	.	.	.	.	.	.	H	F	H	T	A	V	H	N	E	E	Q	L	A	A	L	E	E	A	S	.	.	L	D	E	P	V	T	V	W	M	K	L	D	T	G	M	H	R	L	G	V	R	P	.	E	Q	A	E	A	F	Y	H	R	L	T	Q	C
Query Conservation																			.	.	.	.	.	.																				.	.																							.
Alig confidence																			.	.	.	.	.	.																				.	.																							.
Template Conservation
Template Sequence		X	A	N	Q	L	V	G	R	R	N	X	X	X	V	A	E	L	L	S	D	P	E	F	E	F	F	C	L	V	D	S	V	E	G	V	E	Q	L	G	E	F	F	K	S	V	N	K	Q	L	Q	V	L	L	E	L	G	V	P	G	G	R	T	G	V	R	D	A	A	Q	R	N	A	V	L	E	A	I	T	R	Y
Template Known Secondary structure								S									T	T	T	T		T	T																							T	T												T	T	S	S	S	S	B		S													T	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																							.	.																		.	.	.	.	.
Query SS confidence																							.	.																		.	.	.	.	.
Query Sequence		K	N	V	R	Q	P	V	N	I	V	S	H	F	A	R	A	D	E	P	K	C	.	.	G	A	T	E	K	Q	L	A	I	F	N	T	F	C	E	G	K	.	.	.	.	.	P	G	Q	R	S	I	A	A	S	G	G	I	L	L	W	P	Q	S	H	F	D	W	V	R	P	G	I	I	L	Y	G	V	S	P	L
Query Conservation																							.	.																		.	.	.	.	.
Alig confidence																							.	.																		.	.	.	.	.																																			.
Template Conservation																																																																																	.
Template Sequence		P	D	T	L	K	L	A	G	V	E	L	Y	E	G	V	L	K	E	E	H	E	V	R	E	F	L	Q	S	A	V	A	V	T	R	E	L	V	E	Q	E	R	F	A	R	A	P	A	V	L	S	G	A	G	S	A	W	Y	D	V	V	A	E	E	F	V	K	A	S	E	T	G	K	V	E	V	V	L	R	P	.
Template Known Secondary structure		T	T	T										G	G	G			S																					T	T			S	S	S	S								S	T	T													T	T	S	S								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	R	S	T	G	A	D	F	G	C	Q	P	V	M	S	L	T	S	S	L	I	A	V	R	E	H	K	A	G	E	P	V	G	Y	G	G	T	W	V	S	E	R	D	T	R	L	G	V	V	A	M	G	Y	G	D	G	Y	P	R	A	A	P	S	G	T	P	V	L	V	N	G	R	E	V	P	I	V	G	R
Query Conservation
Alig confidence		.																										.	.																														.	.	.	.	.	.
Template Conservation		.																										.	.																														.	.	.	.	.	.
Template Sequence		.	G	C	Y	L	T	X	G	E	G	L	L	P	A	L	Q	L	W	A	Y	V	Q	S	I	P	E	.	.	P	D	R	A	I	I	G	L	G	K	R	D	S	A	F	D	A	G	X	P	E	P	A	R	H	Y	R	P	G	.	.	.	.	.	.	N	E	A	P	R	D	I	A	A	S	E	G	W	E	I	F	G
Template Known Secondary structure		.			S					T	T																	.	.	T	T					S			T	T	T	S		G	G	G											T	T	.	.	.	.	.	.	S	S	S						G	G	G
Template Predicted Secondary structure		.																										.	.																														.	.	.	.	.	.
Template SS confidence
			277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330							.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	D	M	I	C	V	D	L	G	P	Q	A	Q	D	K	A	G	D	P	V	I	L	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	X	D	Q	H	A	Y	L	R	I	P	A	G	A	D	L	K	V	G	D	X	I	A	F	D
Template Known Secondary structure				S	S								T	T		S			T	T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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